[ Started: 2022-11-05 01:00:26 CET ]
[ CARNIVAL v2.7.2 for BioC-3.16 from https://github.com/saezlab/CARNIVAL@master ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.2-3.16"
[3] "/home/omnipath/local/R/4.2"      "/usr/lib/R/library"             
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details

replacement repositories:
    CRAN: https://cloud.r-project.org

Bioconductor version 3.16 (BiocManager 1.30.19), R 4.2.1 (2022-06-23)
Old packages: 'AUCell', 'GenomeInfoDb', 'ggplot2'
trying URL 'https://bioconductor.org/packages/3.16/bioc/src/contrib/AUCell_1.20.1.tar.gz'
Content type 'application/x-gzip' length 1770649 bytes (1.7 MB)
==================================================
downloaded 1.7 MB

trying URL 'https://bioconductor.org/packages/3.16/bioc/src/contrib/GenomeInfoDb_1.34.1.tar.gz'
Content type 'application/x-gzip' length 3468482 bytes (3.3 MB)
==================================================
downloaded 3.3 MB

trying URL 'https://cloud.r-project.org/src/contrib/ggplot2_3.4.0.tar.gz'
Content type 'application/x-gzip' length 3148426 bytes (3.0 MB)
==================================================
downloaded 3.0 MB

* installing *source* package ‘AUCell’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (AUCell)
* installing *source* package ‘GenomeInfoDb’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GenomeInfoDb)
* installing *source* package ‘ggplot2’ ...
** package ‘ggplot2’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ggplot2)

The downloaded source packages are in
	‘/tmp/RtmpVwuDjl/downloaded_packages’

[ Finished: 2022-11-05 01:01:12 CET ]