[ Started: 2023-01-05 01:00:32 CET ] [ CARNIVAL v2.7.2 for BioC-3.16 from https://github.com/saezlab/CARNIVAL@master ] [1] "Libraries: " "/home/omnipath/local/R/4.2-3.16" [3] "/home/omnipath/local/R/4.2" "/usr/lib/R/library" 'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details replacement repositories: CRAN: https://cloud.r-project.org Bioconductor version 3.16 (BiocManager 1.30.19), R 4.2.2 Patched (2022-11-10 r83330) Old packages: 'GenomeInfoDb' trying URL 'https://bioconductor.org/packages/3.16/bioc/src/contrib/GenomeInfoDb_1.34.6.tar.gz' Content type 'application/x-gzip' length 3469117 bytes (3.3 MB) ================================================== downloaded 3.3 MB * installing *source* package ‘GenomeInfoDb’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GenomeInfoDb) The downloaded source packages are in ‘/tmp/RtmpCDyvuC/downloaded_packages’ [ Finished: 2023-01-05 01:00:49 CET ]