[ Started: 2023-01-14 01:00:26 CET ] [ CARNIVAL v2.7.2 for BioC-3.16 from https://github.com/saezlab/CARNIVAL@master ] [1] "Libraries: " "/home/omnipath/local/R/4.2-3.16" [3] "/home/omnipath/local/R/4.2" "/usr/lib/R/library" 'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details replacement repositories: CRAN: https://cloud.r-project.org Bioconductor version 3.16 (BiocManager 1.30.19), R 4.2.2 Patched (2022-11-10 r83330) Old packages: 'parallelly', 'pbapply' trying URL 'https://cloud.r-project.org/src/contrib/parallelly_1.34.0.tar.gz' Content type 'application/x-gzip' length 136365 bytes (133 KB) ================================================== downloaded 133 KB trying URL 'https://cloud.r-project.org/src/contrib/pbapply_1.7-0.tar.gz' Content type 'application/x-gzip' length 23811 bytes (23 KB) ================================================== downloaded 23 KB * installing *source* package ‘parallelly’ ... ** package ‘parallelly’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (parallelly) * installing *source* package ‘pbapply’ ... ** package ‘pbapply’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pbapply) The downloaded source packages are in ‘/tmp/RtmpVV4xcx/downloaded_packages’ [ Finished: 2023-01-14 01:00:38 CET ]