[ Started: 2023-01-18 01:00:42 CET ]
[ CARNIVAL v2.7.2 for BioC-3.16 from https://github.com/saezlab/CARNIVAL@master ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.2-3.16"
[3] "/home/omnipath/local/R/4.2"      "/usr/lib/R/library"             
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details

replacement repositories:
    CRAN: https://cloud.r-project.org

Bioconductor version 3.16 (BiocManager 1.30.19), R 4.2.2 Patched (2022-11-10
  r83330)
Old packages: 'bookdown', 'DT', 'evaluate'
trying URL 'https://cloud.r-project.org/src/contrib/bookdown_0.32.tar.gz'
Content type 'application/x-gzip' length 854579 bytes (834 KB)
==================================================
downloaded 834 KB

trying URL 'https://cloud.r-project.org/src/contrib/DT_0.27.tar.gz'
Content type 'application/x-gzip' length 1498173 bytes (1.4 MB)
==================================================
downloaded 1.4 MB

trying URL 'https://cloud.r-project.org/src/contrib/evaluate_0.20.tar.gz'
Content type 'application/x-gzip' length 26664 bytes (26 KB)
==================================================
downloaded 26 KB

* installing *source* package ‘bookdown’ ...
** package ‘bookdown’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bookdown)
* installing *source* package ‘DT’ ...
** package ‘DT’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DT)
* installing *source* package ‘evaluate’ ...
** package ‘evaluate’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (evaluate)

The downloaded source packages are in
	‘/tmp/RtmpSqlUBm/downloaded_packages’

Skipping 2 packages ahead of CRAN: evaluate, bookdown
[ Finished: 2023-01-18 01:00:56 CET ]