[ Started: 2023-01-25 01:00:53 CET ]
[ CARNIVAL v2.7.2 for BioC-3.16 from https://github.com/saezlab/CARNIVAL@master ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.2-3.16"
[3] "/home/omnipath/local/R/4.2"      "/usr/lib/R/library"             
trying URL 'https://cran.uni-muenster.de/src/contrib/sass_0.4.5.tar.gz'
Content type 'application/x-gzip' length 3026825 bytes (2.9 MB)
==================================================
downloaded 2.9 MB

* installing *source* package ‘sass’ ...
** package ‘sass’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
/usr/share/R/share/make/shlib.mk:18: warning: overriding recipe for target 'shlib-clean'
Makevars:12: warning: ignoring old recipe for target 'shlib-clean'
gcc -I"/usr/share/R/include" -DNDEBUG -I./libsass/include     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c compile.c -o compile.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I./libsass/include     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c init.cpp -o init.o
MAKEFLAGS= CC="gcc" CFLAGS="-g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 " CXX="g++ -std=gnu++14" AR="ar" LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro" make -C libsass
make[1]: Entering directory '/tmp/Rtmp2wa1JM/R.INSTALL7c07c10e9f2ab/sass/src/libsass'
gcc -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O2 -I ./include  -fPIC -c -o src/cencode.o src/cencode.c
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/ast.o src/ast.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/ast_values.o src/ast_values.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/ast_supports.o src/ast_supports.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/ast_sel_cmp.o src/ast_sel_cmp.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/ast_sel_unify.o src/ast_sel_unify.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/ast_sel_super.o src/ast_sel_super.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/ast_sel_weave.o src/ast_sel_weave.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/ast_selectors.o src/ast_selectors.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/context.o src/context.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/constants.o src/constants.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/fn_utils.o src/fn_utils.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/fn_miscs.o src/fn_miscs.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/fn_maps.o src/fn_maps.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/fn_lists.o src/fn_lists.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/fn_colors.o src/fn_colors.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/fn_numbers.o src/fn_numbers.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/fn_strings.o src/fn_strings.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/fn_selectors.o src/fn_selectors.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/color_maps.o src/color_maps.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/environment.o src/environment.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/ast_fwd_decl.o src/ast_fwd_decl.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/bind.o src/bind.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/file.o src/file.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/util.o src/util.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/util_string.o src/util_string.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/json.o src/json.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/units.o src/units.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/values.o src/values.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/plugins.o src/plugins.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/source.o src/source.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/position.o src/position.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/lexer.o src/lexer.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/parser.o src/parser.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/parser_selectors.o src/parser_selectors.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/prelexer.o src/prelexer.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/eval.o src/eval.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/eval_selectors.o src/eval_selectors.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/expand.o src/expand.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/listize.o src/listize.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/cssize.o src/cssize.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/extender.o src/extender.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/extension.o src/extension.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/stylesheet.o src/stylesheet.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/output.o src/output.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/inspect.o src/inspect.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/emitter.o src/emitter.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/check_nesting.o src/check_nesting.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/remove_placeholders.o src/remove_placeholders.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/sass.o src/sass.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/sass_values.o src/sass_values.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/sass_context.o src/sass_context.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/sass_functions.o src/sass_functions.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/sass2scss.o src/sass2scss.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/backtrace.o src/backtrace.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/operators.o src/operators.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/ast2c.o src/ast2c.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/c2ast.o src/c2ast.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/to_value.o src/to_value.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/source_map.o src/source_map.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/error_handling.o src/error_handling.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/memory/allocator.o src/memory/allocator.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/memory/shared_ptr.o src/memory/shared_ptr.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/utf8_string.o src/utf8_string.cpp
g++ -std=gnu++14 -Wall -O2 -std=c++11 -I ./include  -fPIC -c -o src/base64vlq.o src/base64vlq.cpp
mkdir lib
ar rcvs lib/libsass.a src/cencode.o src/ast.o src/ast_values.o src/ast_supports.o src/ast_sel_cmp.o src/ast_sel_unify.o src/ast_sel_super.o src/ast_sel_weave.o src/ast_selectors.o src/context.o src/constants.o src/fn_utils.o src/fn_miscs.o src/fn_maps.o src/fn_lists.o src/fn_colors.o src/fn_numbers.o src/fn_strings.o src/fn_selectors.o src/color_maps.o src/environment.o src/ast_fwd_decl.o src/bind.o src/file.o src/util.o src/util_string.o src/json.o src/units.o src/values.o src/plugins.o src/source.o src/position.o src/lexer.o src/parser.o src/parser_selectors.o src/prelexer.o src/eval.o src/eval_selectors.o src/expand.o src/listize.o src/cssize.o src/extender.o src/extension.o src/stylesheet.o src/output.o src/inspect.o src/emitter.o src/check_nesting.o src/remove_placeholders.o src/sass.o src/sass_values.o src/sass_context.o src/sass_functions.o src/sass2scss.o src/backtrace.o src/operators.o src/ast2c.o src/c2ast.o src/to_value.o src/source_map.o src/error_handling.o src/memory/allocator.o src/memory/shared_ptr.o src/utf8_string.o src/base64vlq.o
a - src/cencode.o
a - src/ast.o
a - src/ast_values.o
a - src/ast_supports.o
a - src/ast_sel_cmp.o
a - src/ast_sel_unify.o
a - src/ast_sel_super.o
a - src/ast_sel_weave.o
a - src/ast_selectors.o
a - src/context.o
a - src/constants.o
a - src/fn_utils.o
a - src/fn_miscs.o
a - src/fn_maps.o
a - src/fn_lists.o
a - src/fn_colors.o
a - src/fn_numbers.o
a - src/fn_strings.o
a - src/fn_selectors.o
a - src/color_maps.o
a - src/environment.o
a - src/ast_fwd_decl.o
a - src/bind.o
a - src/file.o
a - src/util.o
a - src/util_string.o
a - src/json.o
a - src/units.o
a - src/values.o
a - src/plugins.o
a - src/source.o
a - src/position.o
a - src/lexer.o
a - src/parser.o
a - src/parser_selectors.o
a - src/prelexer.o
a - src/eval.o
a - src/eval_selectors.o
a - src/expand.o
a - src/listize.o
a - src/cssize.o
a - src/extender.o
a - src/extension.o
a - src/stylesheet.o
a - src/output.o
a - src/inspect.o
a - src/emitter.o
a - src/check_nesting.o
a - src/remove_placeholders.o
a - src/sass.o
a - src/sass_values.o
a - src/sass_context.o
a - src/sass_functions.o
a - src/sass2scss.o
a - src/backtrace.o
a - src/operators.o
a - src/ast2c.o
a - src/c2ast.o
a - src/to_value.o
a - src/source_map.o
a - src/error_handling.o
a - src/memory/allocator.o
a - src/memory/shared_ptr.o
a - src/utf8_string.o
a - src/base64vlq.o
make[1]: Leaving directory '/tmp/Rtmp2wa1JM/R.INSTALL7c07c10e9f2ab/sass/src/libsass'
g++ -std=gnu++14 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o sass.so compile.o init.o ./libsass/lib/libsass.a -L/usr/lib/R/lib -lR
installing to /home/omnipath/local/R/4.2-3.16/00LOCK-sass/00new/sass/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sass)

The downloaded source packages are in
	‘/tmp/RtmplsSkSP/downloaded_packages’
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details

replacement repositories:
    CRAN: https://cloud.r-project.org

Bioconductor version 3.16 (BiocManager 1.30.19), R 4.2.2 Patched (2022-11-10
  r83330)
Old packages: 'lubridate', 'network', 'sna', 'spatstat.random',
  'statnet.common', 'tidyr'
trying URL 'https://cloud.r-project.org/src/contrib/lubridate_1.9.1.tar.gz'
Content type 'application/x-gzip' length 426914 bytes (416 KB)
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downloaded 416 KB

trying URL 'https://cloud.r-project.org/src/contrib/network_1.18.1.tar.gz'
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downloaded 492 KB

trying URL 'https://cloud.r-project.org/src/contrib/sna_2.7-1.tar.gz'
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downloaded 295 KB

trying URL 'https://cloud.r-project.org/src/contrib/spatstat.random_3.1-2.tar.gz'
Content type 'application/x-gzip' length 255100 bytes (249 KB)
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downloaded 249 KB

trying URL 'https://cloud.r-project.org/src/contrib/statnet.common_4.8.0.tar.gz'
Content type 'application/x-gzip' length 308122 bytes (300 KB)
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downloaded 300 KB

trying URL 'https://cloud.r-project.org/src/contrib/tidyr_1.3.0.tar.gz'
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downloaded 804 KB

* installing *source* package ‘lubridate’ ...
** package ‘lubridate’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c datetime.c -o datetime.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c init.c -o init.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c period.c -o period.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c tparse.c -o tparse.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c utils.c -o utils.o
gcc -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o lubridate.so datetime.o init.o period.o tparse.o utils.o -L/usr/lib/R/lib -lR
installing to /home/omnipath/local/R/4.2-3.16/00LOCK-lubridate/00new/lubridate/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lubridate)
* installing *source* package ‘spatstat.random’ ...
** package ‘spatstat.random’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c Perfect.cc -o Perfect.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c areaint.c -o areaint.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c badgey.c -o badgey.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c dgs.c -o dgs.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c diggra.c -o diggra.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c dist2.c -o dist2.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c fexitc.c -o fexitc.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c fiksel.c -o fiksel.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c getcif.c -o getcif.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c geyer.c -o geyer.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c hardcore.c -o hardcore.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c init.c -o init.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c lennard.c -o lennard.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c lookup.c -o lookup.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c methas.c -o methas.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c mhsnoop.c -o mhsnoop.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c multihard.c -o multihard.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c penttinen.c -o penttinen.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c rcauchy.c -o rcauchy.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c rmatclus.c -o rmatclus.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c rthin.c -o rthin.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c rthomas.c -o rthomas.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c rtruncpois.c -o rtruncpois.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c sftcr.c -o sftcr.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c straush.c -o straush.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c straushm.c -o straushm.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c strauss.c -o strauss.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c straussm.c -o straussm.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c triplets.c -o triplets.o
g++ -std=gnu++14 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o spatstat.random.so Perfect.o areaint.o badgey.o dgs.o diggra.o dist2.o fexitc.o fiksel.o getcif.o geyer.o hardcore.o init.o lennard.o lookup.o methas.o mhsnoop.o multihard.o penttinen.o rcauchy.o rmatclus.o rthin.o rthomas.o rtruncpois.o sftcr.o straush.o straushm.o strauss.o straussm.o triplets.o -L/usr/lib/R/lib -lR
installing to /home/omnipath/local/R/4.2-3.16/00LOCK-spatstat.random/00new/spatstat.random/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (spatstat.random)
* installing *source* package ‘statnet.common’ ...
** package ‘statnet.common’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c init.c -o init.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c logspace_utils.c -o logspace_utils.o
gcc -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o statnet.common.so init.o logspace_utils.o -L/usr/lib/R/lib -lR
installing to /home/omnipath/local/R/4.2-3.16/00LOCK-statnet.common/00new/statnet.common/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (statnet.common)
* installing *source* package ‘tidyr’ ...
** package ‘tidyr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG  -I'/home/omnipath/local/R/4.2-3.16/cpp11/include'    -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c cpp11.cpp -o cpp11.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG  -I'/home/omnipath/local/R/4.2-3.16/cpp11/include'    -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c melt.cpp -o melt.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG  -I'/home/omnipath/local/R/4.2-3.16/cpp11/include'    -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c simplifyPieces.cpp -o simplifyPieces.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o tidyr.so cpp11.o melt.o simplifyPieces.o -L/usr/lib/R/lib -lR
installing to /home/omnipath/local/R/4.2-3.16/00LOCK-tidyr/00new/tidyr/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tidyr)
* installing *source* package ‘network’ ...
** package ‘network’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c Rinit.c -o Rinit.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c access.c -o access.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c constructors.c -o constructors.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c layout.c -o layout.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c utils.c -o utils.o
gcc -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o network.so Rinit.o access.o constructors.o layout.o utils.o -L/usr/lib/R/lib -lR
installing to /home/omnipath/local/R/4.2-3.16/00LOCK-network/00new/network/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (network)
* installing *source* package ‘sna’ ...
** package ‘sna’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c Rinit.c -o Rinit.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c cohesion.c -o cohesion.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c components.c -o components.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c geodist.c -o geodist.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c gli.c -o gli.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c layout.c -o layout.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c likelihood.c -o likelihood.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c nli.c -o nli.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c paths.c -o paths.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c randomgraph.c -o randomgraph.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c triads.c -o triads.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-a3XuZ5/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c utils.c -o utils.o
gcc -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o sna.so Rinit.o cohesion.o components.o geodist.o gli.o layout.o likelihood.o nli.o paths.o randomgraph.o triads.o utils.o -L/usr/lib/R/lib -lR
installing to /home/omnipath/local/R/4.2-3.16/00LOCK-sna/00new/sna/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sna)

The downloaded source packages are in
	‘/tmp/RtmplsSkSP/downloaded_packages’

Skipping 2 packages ahead of CRAN: lubridate, tidyr
[ Finished: 2023-01-25 01:03:27 CET ]