[ Started: 2023-03-22 22:07:49 CET ]
[ CARNIVAL v2.7.2 for BioC-3.16 from https://github.com/saezlab/CARNIVAL@master ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.2-3.16"
[3] "/home/omnipath/local/R/4.2"      "/usr/lib/R/library"             
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.16 (BiocManager 1.30.20), R 4.2.2 Patched (2022-11-10
  r83330)
Old packages: 'biomaRt', 'datawizard'
trying URL 'https://bioconductor.org/packages/3.16/bioc/src/contrib/biomaRt_2.54.1.tar.gz'
Content type 'application/x-gzip' length 668401 bytes (652 KB)
==================================================
downloaded 652 KB

trying URL 'https://cloud.r-project.org/src/contrib/datawizard_0.7.0.tar.gz'
Content type 'application/x-gzip' length 619273 bytes (604 KB)
==================================================
downloaded 604 KB

* installing *source* package ‘biomaRt’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biomaRt)
* installing *source* package ‘datawizard’ ...
** package ‘datawizard’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (datawizard)

The downloaded source packages are in
	‘/tmp/RtmpMB5tZU/downloaded_packages’
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.16 (BiocManager 1.30.20), R 4.2.2 Patched (2022-11-10
  r83330)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

Skipping 3 packages ahead of CRAN: vctrs, pillar, dplyr
[ Finished: 2023-03-22 22:08:18 CET ]