[ Started: 2023-04-09 04:53:41 CEST ] [ CARNIVAL v2.7.2 for BioC-3.16 from https://github.com/saezlab/CARNIVAL@master ] [1] "Libraries: " "/home/omnipath/local/R/4.2-3.16" [3] "/home/omnipath/local/R/4.2" "/usr/lib/R/library" Warning: unable to access index for repository https://cran.uni-muenster.de/src/contrib: cannot open URL 'https://cran.uni-muenster.de/src/contrib/PACKAGES' Warning: unable to access index for repository https://cran.uni-muenster.de/src/contrib: cannot open URL 'https://cran.uni-muenster.de/src/contrib/PACKAGES' 'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")' for details. Replacement repositories: CRAN: https://cloud.r-project.org Bioconductor version 3.16 (BiocManager 1.30.20), R 4.2.3 (2023-03-15) Old packages: 'quantreg' trying URL 'https://cloud.r-project.org/src/contrib/quantreg_5.95.tar.gz' Content type 'application/x-gzip' length 1026027 bytes (1001 KB) ================================================== downloaded 1001 KB * installing *source* package ‘quantreg’ ... ** package ‘quantreg’ successfully unpacked and MD5 sums checked ** using staged installation ** libs gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c akj.f -o akj.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c boot.f -o boot.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c bound.f -o bound.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c boundc.f -o boundc.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c brute.f -o brute.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c chlfct.f -o chlfct.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c cholesky.f -o cholesky.o cholesky.f:2946:72: 2946 | IF ( NODE ) 400, 900, 500 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) cholesky.f:2980:72: 2980 | IF ( RNODE ) 1100, 1800, 1200 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) cholesky.f:3297:72: 3297 | IF ( ENODE ) 400, 800, 500 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) cholesky.f:3354:72: 3354 | IF ( NODE ) 1000, 2100, 1100 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) cholesky.f:3428:72: 3428 | IF ( NODE ) 1700, 2000, 1800 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c combos.f -o combos.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c crqf.f -o crqf.o crqf.f:98:72: 98 | DO 5 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 5 at (1) crqf.f:99:72: 99 | 5 WA(I,J) = X(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 5 at (1) crqf.f:140:72: 140 | 25 WA(L,J) = X(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 25 at (1) crqf.f:149:72: 149 | 50 SOL(J+1,1) = WF(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 50 at (1) crqf.f:165:72: 165 | 60 XH(K,J) = X(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 60 at (1) crqf.f:180:72: 180 | 80 S = S - WF(J)*X(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 80 at (1) crqf.f:181:72: 181 | 90 WE(I) = S | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 90 at (1) crqf.f:192:72: 192 | 210 S = DMIN1(WD(J),S) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 210 at (1) crqf.f:205:72: 205 | 240 SOL(J+1,LSOL) = WF(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 240 at (1) crqf.f:226:72: 226 | 250 WD(I) = ZERO | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 250 at (1) crqf.f:228:72: 228 | 260 WD(H(J)) = ONE | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 260 at (1) crqf.f:236:72: 236 | 270 S = S + X(I,J)*XH(J,KM) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 270 at (1) crqf.f:258:72: 258 | DO 310 J = 1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 310 at (1) crqf.f:259:72: 259 | 310 XH(K,J) = X(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 310 at (1) crqf.f:273:72: 273 | 330 S = S + XH(K,J)*Y(H(J)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 330 at (1) crqf.f:274:72: 274 | 340 WF(K) = S | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 340 at (1) crqf.f:278:72: 278 | 350 S = S - WF(J)*X(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 350 at (1) crqf.f:279:72: 279 | 360 WE(I) = S | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 360 at (1) crqf.f:287:72: 287 | 370 SOL(J+1,LSOL) = WF(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 370 at (1) crqf.f:330:72: 330 | 396 B2 = B2 + X(I,J) * SOL(J+1,LSOL - 1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 396 at (1) crqf.f:369:72: 369 | 506 WF(J) = ZERO | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 506 at (1) crqf.f:376:72: 376 | 510 WA(L1,J) = X(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 510 at (1) crqf.f:379:72: 379 | 514 WF(J) = WF(J) + X(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 514 at (1) crqf.f:389:72: 389 | 520 WF(J) = WF(J) + (ONE - W) * X(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 520 at (1) crqf.f:394:72: 394 | 534 WA(MAL,J) = WF(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 534 at (1) crqf.f:413:72: 413 | 540 XH(K,J) = X(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 540 at (1) crqf.f:429:72: 429 | 610 WD(I) = SOL(N+2,I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 610 at (1) crqf.f:441:72: 441 | 650 WF(J) = S/V | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 650 at (1) crqf.f:445:72: 445 | 660 S = S + WF(J) * SOL(J+1,I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 660 at (1) crqf.f:446:72: 446 | 670 SOL(N+2,I) = S | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 670 at (1) crqf.f:487:72: 487 | 60 A = A + X(I,K)*XH(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 60 at (1) crqf.f:488:72: 488 | 70 WA(I,J) = A | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 70 at (1) crqf.f:497:72: 497 | 90 IFLAG(I) = 0 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 90 at (1) crqf.f:499:72: 499 | 95 IFLAG(H(J)) = 1 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 95 at (1) crqf.f:544:72: 544 | 130 IFLAG(J) = IFLAG(J+M) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 130 at (1) gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c crqfnb.f -o crqfnb.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c dsel05.f -o dsel05.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c etime.f -o etime.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c extract.f -o extract.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c frand.c -o frand.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c grexp.f -o grexp.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c idmin.f -o idmin.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c iswap.f -o iswap.o iswap.f:40:72: 40 | IF (INCX-1) 5,20,60 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c kuantile.f -o kuantile.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c kuantiles.f -o kuantiles.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c linpack.f -o linpack.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mcmb.c -o mcmb.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c penalty.f -o penalty.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c pfnb.f -o pfnb.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c powell.f -o powell.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c profnb.f -o profnb.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c pwxy.f -o pwxy.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c qfnb.f -o qfnb.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c qselect.f -o qselect.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c quantreg_init.c -o quantreg_init.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c rls.f -o rls.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c rq0.f -o rq0.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c rq1.f -o rq1.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c rqbr.f -o rqbr.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c rqfn.f -o rqfn.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c rqfnb.f -o rqfnb.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c rqfnc.f -o rqfnc.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c rqs.f -o rqs.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c sakj.f -o sakj.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c sparskit2.f -o sparskit2.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c srqfn.f -o srqfn.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c srqfnc.f -o srqfnc.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -c srtpai.f -o srtpai.o srtpai.f:19:72: 19 | 10 P(1, I) = I | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) gcc -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -o quantreg.so akj.o boot.o bound.o boundc.o brute.o chlfct.o cholesky.o combos.o crqf.o crqfnb.o dsel05.o etime.o extract.o frand.o grexp.o idmin.o iswap.o kuantile.o kuantiles.o linpack.o mcmb.o penalty.o pfnb.o powell.o profnb.o pwxy.o qfnb.o qselect.o quantreg_init.o rls.o rq0.o rq1.o rqbr.o rqfn.o rqfnb.o rqfnc.o rqs.o sakj.o sparskit2.o srqfn.o srqfnc.o srtpai.o -llapack -lblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR installing to /home/omnipath/local/R/4.2-3.16/00LOCK-quantreg/00new/quantreg/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (quantreg) The downloaded source packages are in ‘/tmp/RtmpMtqh3K/downloaded_packages’ 'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")' for details. Replacement repositories: CRAN: https://cloud.r-project.org Bioconductor version 3.16 (BiocManager 1.30.20), R 4.2.3 (2023-03-15) Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TRUE` to re-install: 'BiocCheck' Skipping 17 packages not available: BiocManager, yaml, rmarkdown, knitr, bookdown, sessioninfo, testthat, covr, RefManageR, rjson, tidyr, tibble, dplyr, igraph, lpSolve, stringr, readr [ Finished: 2023-04-09 04:54:02 CEST ]