[ Started: 2023-08-17 23:19:14 CEST ]
[ CARNIVAL v2.7.2 for BioC-3.16 from https://github.com/saezlab/CARNIVAL@master ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.2-3.16"
[3] "/home/omnipath/local/R/4.2"      "/usr/lib/R/library"             
Bioconductor version '3.16' is out-of-date; the current release version '3.17'
  is available with R version '4.3'; see https://bioconductor.org/install
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.16 (BiocManager 1.30.22), R 4.2.3 (2023-03-15)
Old packages: 'uuid'
trying URL 'https://cloud.r-project.org/src/contrib/uuid_1.1-1.tar.gz'
Content type 'application/x-gzip' length 79008 bytes (77 KB)
==================================================
downloaded 77 KB

* installing *source* package ‘uuid’ ...
** package ‘uuid’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for grp.h... yes
checking for langinfo.h... yes
checking for locale.h... yes
checking for netinet/in.h... yes
checking for stdlib.h... (cached) yes
checking for sys/file.h... yes
checking for sys/ioctl.h... yes
checking for sys/socket.h... yes
checking for sys/sockio.h... no
checking for sys/syscall.h... yes
checking for sys/sendfile.h... yes
checking for sys/time.h... yes
checking for sys/un.h... yes
checking for unistd.h... (cached) yes
checking for net/if.h... yes
checking for net/if_dl.h... no
checking for dirfd... yes
checking for err... yes
checking for errx... yes
checking for getexecname... no
checking for getrandom... yes
checking for jrand48... yes
checking for llseek... no
checking for lchown... yes
checking for mempcpy... yes
checking for mkostemp... yes
checking for nanosleep... yes
checking for sendfile... yes
checking for srandom... yes
checking for strnchr... no
checking for strndup... yes
checking for strnlen... yes
checking for usleep... yes
checking for warn... yes
checking for warnx... yes
checking for flock... yes
checking for struct sockaddr.sa_len... no
checking for dlfcn.h... yes
checking for library containing dlsym... none required
checking for thread local storage (TLS) support... yes
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating src/config.h
** libs
gcc -I"/usr/share/R/include" -DNDEBUG -include config.h      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c R.c -o R.o
gcc -I"/usr/share/R/include" -DNDEBUG -include config.h      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c Ruuid.c -o Ruuid.o
gcc -I"/usr/share/R/include" -DNDEBUG -include config.h      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c clear.c -o clear.o
gcc -I"/usr/share/R/include" -DNDEBUG -include config.h      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c compare.c -o compare.o
gcc -I"/usr/share/R/include" -DNDEBUG -include config.h      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c copy.c -o copy.o
gcc -I"/usr/share/R/include" -DNDEBUG -include config.h      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c gen_uuid.c -o gen_uuid.o
gcc -I"/usr/share/R/include" -DNDEBUG -include config.h      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c isnull.c -o isnull.o
gcc -I"/usr/share/R/include" -DNDEBUG -include config.h      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c md5.c -o md5.o
gcc -I"/usr/share/R/include" -DNDEBUG -include config.h      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c pack.c -o pack.o
gcc -I"/usr/share/R/include" -DNDEBUG -include config.h      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c parse.c -o parse.o
gcc -I"/usr/share/R/include" -DNDEBUG -include config.h      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c rand.c -o rand.o
gcc -I"/usr/share/R/include" -DNDEBUG -include config.h      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c randutils.c -o randutils.o
gcc -I"/usr/share/R/include" -DNDEBUG -include config.h      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c sha1.c -o sha1.o
gcc -I"/usr/share/R/include" -DNDEBUG -include config.h      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c unpack.c -o unpack.o
gcc -I"/usr/share/R/include" -DNDEBUG -include config.h      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-LhKvHL/r-base-4.2.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c unparse.c -o unparse.o
gcc -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -o uuid.so R.o Ruuid.o clear.o compare.o copy.o gen_uuid.o isnull.o md5.o pack.o parse.o rand.o randutils.o sha1.o unpack.o unparse.o -L/usr/lib/R/lib -lR
installing to /home/omnipath/local/R/4.2-3.16/00LOCK-uuid/00new/uuid/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (uuid)

The downloaded source packages are in
	‘/tmp/RtmpPH65rU/downloaded_packages’
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.16 (BiocManager 1.30.22), R 4.2.3 (2023-03-15)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

[ Finished: 2023-08-17 23:19:32 CEST ]