[ Started: 2022-11-16 01:00:06 CET ] [ CARNIVAL v2.7.2 for BioC-3.17 from https://github.com/saezlab/CARNIVAL@master ] Hit:1 http://de.archive.ubuntu.com/ubuntu focal InRelease Get:2 http://security.ubuntu.com/ubuntu focal-security InRelease [114 kB] Get:3 http://de.archive.ubuntu.com/ubuntu focal-updates InRelease [114 kB] Get:4 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ InRelease [3,622 B] Hit:5 http://ppa.launchpad.net/deadsnakes/ppa/ubuntu focal InRelease Get:6 http://de.archive.ubuntu.com/ubuntu focal-backports InRelease [108 kB] Get:7 http://de.archive.ubuntu.com/ubuntu focal-updates/main i386 Packages [751 kB] Get:8 http://de.archive.ubuntu.com/ubuntu focal-updates/main amd64 Packages [2,228 kB] Get:9 http://security.ubuntu.com/ubuntu focal-security/main i386 Packages [520 kB] Get:10 http://de.archive.ubuntu.com/ubuntu focal-updates/main Translation-en [389 kB] Get:11 http://de.archive.ubuntu.com/ubuntu focal-updates/main amd64 DEP-11 Metadata [275 kB] Get:12 http://de.archive.ubuntu.com/ubuntu focal-updates/main amd64 c-n-f Metadata [16.0 kB] Get:13 http://de.archive.ubuntu.com/ubuntu focal-updates/restricted amd64 Packages [1,421 kB] Get:14 http://de.archive.ubuntu.com/ubuntu focal-updates/restricted i386 Packages [27.9 kB] Get:15 http://de.archive.ubuntu.com/ubuntu focal-updates/restricted Translation-en [200 kB] Get:16 http://de.archive.ubuntu.com/ubuntu focal-updates/restricted amd64 c-n-f Metadata [636 B] Get:17 http://de.archive.ubuntu.com/ubuntu focal-updates/universe i386 Packages [701 kB] Get:18 http://security.ubuntu.com/ubuntu focal-security/main amd64 Packages [1,847 kB] Get:19 http://de.archive.ubuntu.com/ubuntu focal-updates/universe amd64 Packages [995 kB] Get:20 http://security.ubuntu.com/ubuntu focal-security/main Translation-en [305 kB] Get:21 http://security.ubuntu.com/ubuntu focal-security/main amd64 DEP-11 Metadata [40.7 kB] Get:22 http://security.ubuntu.com/ubuntu focal-security/main amd64 c-n-f Metadata [11.2 kB] Get:23 http://security.ubuntu.com/ubuntu focal-security/restricted i386 Packages [26.5 kB] Get:24 http://security.ubuntu.com/ubuntu focal-security/restricted amd64 Packages [1,327 kB] Get:25 http://de.archive.ubuntu.com/ubuntu focal-updates/universe Translation-en [231 kB] Get:26 http://de.archive.ubuntu.com/ubuntu focal-updates/universe amd64 DEP-11 Metadata [406 kB] Get:27 http://security.ubuntu.com/ubuntu focal-security/restricted Translation-en [188 kB] Get:28 http://security.ubuntu.com/ubuntu focal-security/universe amd64 Packages [768 kB] Get:29 http://de.archive.ubuntu.com/ubuntu focal-updates/universe DEP-11 48x48 Icons [266 kB] Get:30 http://security.ubuntu.com/ubuntu focal-security/universe i386 Packages [571 kB] Get:31 http://security.ubuntu.com/ubuntu focal-security/universe Translation-en [148 kB] Get:32 http://de.archive.ubuntu.com/ubuntu focal-updates/universe DEP-11 64x64 Icons [476 kB] Get:33 http://security.ubuntu.com/ubuntu focal-security/universe amd64 DEP-11 Metadata [94.2 kB] Get:34 http://security.ubuntu.com/ubuntu focal-security/universe DEP-11 48x48 Icons [45.5 kB] Get:35 http://security.ubuntu.com/ubuntu focal-security/universe DEP-11 64x64 Icons [94.9 kB] Get:36 http://security.ubuntu.com/ubuntu focal-security/universe amd64 c-n-f Metadata [16.7 kB] Get:37 http://security.ubuntu.com/ubuntu focal-security/multiverse i386 Packages [7,204 B] Get:38 http://security.ubuntu.com/ubuntu focal-security/multiverse amd64 Packages [22.2 kB] Get:39 http://security.ubuntu.com/ubuntu focal-security/multiverse Translation-en [5,400 B] Get:40 http://de.archive.ubuntu.com/ubuntu focal-updates/universe amd64 c-n-f Metadata [23.0 kB] Get:41 http://de.archive.ubuntu.com/ubuntu focal-updates/multiverse amd64 Packages [24.5 kB] Get:42 http://de.archive.ubuntu.com/ubuntu focal-updates/multiverse i386 Packages [8,480 B] Get:43 http://de.archive.ubuntu.com/ubuntu focal-updates/multiverse amd64 DEP-11 Metadata [940 B] Get:44 http://de.archive.ubuntu.com/ubuntu focal-updates/multiverse amd64 c-n-f Metadata [592 B] Get:45 http://de.archive.ubuntu.com/ubuntu focal-backports/main amd64 DEP-11 Metadata [7,972 B] Get:46 http://de.archive.ubuntu.com/ubuntu focal-backports/universe amd64 DEP-11 Metadata [30.5 kB] Get:47 http://security.ubuntu.com/ubuntu focal-security/multiverse amd64 DEP-11 Metadata [940 B] Get:48 http://security.ubuntu.com/ubuntu focal-security/multiverse DEP-11 48x48 Icons [1,867 B] Get:49 http://security.ubuntu.com/ubuntu focal-security/multiverse DEP-11 64x64 Icons [2,497 B] Get:50 http://security.ubuntu.com/ubuntu focal-security/multiverse amd64 c-n-f Metadata [516 B] Fetched 14.9 MB in 2s (6,264 kB/s) Reading package lists... [1] "Libraries: " "/home/omnipath/local/R/4.2-3.17" [3] "/home/omnipath/local/R/4.2" "/usr/lib/R/library" Warning message: package ‘BiocCheck’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages Reading package lists... Building dependency tree... Reading state information... libicu-dev is already the newest version (66.1-2ubuntu2.1). 0 to upgrade, 0 to newly install, 0 to remove and 32 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libglpk-dev is already the newest version (4.65-2). 0 to upgrade, 0 to newly install, 0 to remove and 32 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libgmp3-dev is already the newest version (2:6.2.0+dfsg-4ubuntu0.1). 0 to upgrade, 0 to newly install, 0 to remove and 32 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libxml2-dev is already the newest version (2.9.10+dfsg-5ubuntu0.20.04.4). 0 to upgrade, 0 to newly install, 0 to remove and 32 not to upgrade. Reading package lists... Building dependency tree... Reading state information... make is already the newest version (4.2.1-1.2). 0 to upgrade, 0 to newly install, 0 to remove and 32 not to upgrade. Reading package lists... Building dependency tree... Reading state information... pandoc is already the newest version (2.5-3build2). 0 to upgrade, 0 to newly install, 0 to remove and 32 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libcurl4-openssl-dev is already the newest version (7.68.0-1ubuntu2.14). 0 to upgrade, 0 to newly install, 0 to remove and 32 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libssl-dev is already the newest version (1.1.1f-1ubuntu2.16). 0 to upgrade, 0 to newly install, 0 to remove and 32 not to upgrade. apt-get install -y libicu-dev apt-get install -y libglpk-dev 0 0 apt-get install -y libgmp3-dev apt-get install -y libxml2-dev 0 0 apt-get install -y make apt-get install -y pandoc 0 0 apt-get install -y libcurl4-openssl-dev apt-get install -y libssl-dev 0 0 [ Finished: 2022-11-16 01:00:22 CET ]