[ Started: 2023-03-20 15:31:26 CET ] [ CARNIVAL v2.7.2 for BioC-3.17 from https://github.com/saezlab/CARNIVAL@master ] Hit:1 http://de.archive.ubuntu.com/ubuntu jammy InRelease Get:2 http://security.ubuntu.com/ubuntu jammy-security InRelease [110 kB] Get:3 http://de.archive.ubuntu.com/ubuntu jammy-updates InRelease [119 kB] Get:4 http://de.archive.ubuntu.com/ubuntu jammy-backports InRelease [107 kB] Get:5 http://security.ubuntu.com/ubuntu jammy-security/main amd64 Packages [692 kB] Get:6 https://cloud.r-project.org/bin/linux/ubuntu jammy-cran40/ InRelease [3,626 B] Get:7 http://security.ubuntu.com/ubuntu jammy-security/main i386 Packages [272 kB] Get:8 http://de.archive.ubuntu.com/ubuntu jammy-updates/main amd64 Packages [948 kB] Get:9 http://security.ubuntu.com/ubuntu jammy-security/main amd64 DEP-11 Metadata [41.5 kB] Get:10 http://security.ubuntu.com/ubuntu jammy-security/main amd64 c-n-f Metadata [8,832 B] Get:11 http://security.ubuntu.com/ubuntu jammy-security/universe i386 Packages [518 kB] Get:12 http://security.ubuntu.com/ubuntu jammy-security/universe amd64 Packages [710 kB] Get:13 http://security.ubuntu.com/ubuntu jammy-security/universe amd64 DEP-11 Metadata [18.5 kB] Get:14 http://security.ubuntu.com/ubuntu jammy-security/universe amd64 c-n-f Metadata [13.8 kB] Get:15 http://de.archive.ubuntu.com/ubuntu jammy-updates/main i386 Packages [458 kB] Get:16 http://de.archive.ubuntu.com/ubuntu jammy-updates/main amd64 DEP-11 Metadata [101 kB] Get:17 http://de.archive.ubuntu.com/ubuntu jammy-updates/universe i386 Packages [605 kB] Get:18 http://de.archive.ubuntu.com/ubuntu jammy-updates/universe amd64 Packages [890 kB] Get:19 http://de.archive.ubuntu.com/ubuntu jammy-updates/universe amd64 DEP-11 Metadata [269 kB] Get:20 http://de.archive.ubuntu.com/ubuntu jammy-updates/multiverse amd64 DEP-11 Metadata [940 B] Get:21 http://de.archive.ubuntu.com/ubuntu jammy-backports/main amd64 DEP-11 Metadata [8,000 B] Get:22 http://de.archive.ubuntu.com/ubuntu jammy-backports/universe amd64 DEP-11 Metadata [12.4 kB] Fetched 5,906 kB in 1s (5,470 kB/s) Reading package lists... [1] "Libraries: " "/home/omnipath/local/R/4.3-3.17" [3] "/home/omnipath/local/R/4.3" "/opt/R-devel/lib/R/library" Reading package lists... Building dependency tree... Reading state information... libicu-dev is already the newest version (70.1-2). The following packages were automatically installed and are no longer required: gcc-10-base libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 48 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libglpk-dev is already the newest version (5.0-1). The following packages were automatically installed and are no longer required: gcc-10-base libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 48 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libgmp3-dev is already the newest version (2:6.2.1+dfsg-3ubuntu1). The following packages were automatically installed and are no longer required: gcc-10-base libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 48 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libxml2-dev is already the newest version (2.9.13+dfsg-1ubuntu0.2). The following packages were automatically installed and are no longer required: gcc-10-base libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 48 not to upgrade. Reading package lists... Building dependency tree... Reading state information... make is already the newest version (4.3-4.1build1). The following packages were automatically installed and are no longer required: gcc-10-base libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 48 not to upgrade. Reading package lists... Building dependency tree... Reading state information... pandoc is already the newest version (2.9.2.1-3ubuntu2). The following packages were automatically installed and are no longer required: gcc-10-base libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 48 not to upgrade. Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: gcc-10-base libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: curl libcurl4 Suggested packages: libcurl4-doc libidn11-dev libkrb5-dev libldap2-dev librtmp-dev The following packages will be upgraded: curl libcurl4 libcurl4-openssl-dev 3 to upgrade, 0 to newly install, 0 to remove and 45 not to upgrade. Need to get 870 kB of archives. After this operation, 4,096 B of additional disk space will be used. Get:1 http://security.ubuntu.com/ubuntu jammy-security/main amd64 libcurl4-openssl-dev amd64 7.81.0-1ubuntu1.10 [386 kB] Get:2 http://security.ubuntu.com/ubuntu jammy-security/main amd64 curl amd64 7.81.0-1ubuntu1.10 [194 kB] Get:3 http://security.ubuntu.com/ubuntu jammy-security/main amd64 libcurl4 amd64 7.81.0-1ubuntu1.10 [290 kB] debconf: Unable to initialise frontend: Dialog debconf: (Dialogue frontend will not work on a dumb terminal, an Emacs shell buffer, or without a controlling terminal.) debconf: falling back to frontend: Readline debconf: Unable to initialise frontend: Readline debconf: (This frontend requires a controlling tty.) debconf: falling back to frontend: Teletype dpkg-preconfigure: Unable to re-open stdin: Fetched 870 kB in 1s (971 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 635176 files and directories currently installed.) Preparing to unpack .../libcurl4-openssl-dev_7.81.0-1ubuntu1.10_amd64.deb ... Unpacking libcurl4-openssl-dev:amd64 (7.81.0-1ubuntu1.10) over (7.81.0-1ubuntu1.8) ... Preparing to unpack .../curl_7.81.0-1ubuntu1.10_amd64.deb ... Unpacking curl (7.81.0-1ubuntu1.10) over (7.81.0-1ubuntu1.8) ... Preparing to unpack .../libcurl4_7.81.0-1ubuntu1.10_amd64.deb ... Unpacking libcurl4:amd64 (7.81.0-1ubuntu1.10) over (7.81.0-1ubuntu1.8) ... Setting up libcurl4:amd64 (7.81.0-1ubuntu1.10) ... Setting up curl (7.81.0-1ubuntu1.10) ... Setting up libcurl4-openssl-dev:amd64 (7.81.0-1ubuntu1.10) ... Processing triggers for man-db (2.10.2-1) ... Processing triggers for libc-bin (2.35-0ubuntu3.1) ... Reading package lists... Building dependency tree... Reading state information... libssl-dev is already the newest version (3.0.2-0ubuntu1.8). The following packages were automatically installed and are no longer required: gcc-10-base libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 45 not to upgrade. apt-get install -y libicu-dev apt-get install -y libglpk-dev 0 0 apt-get install -y libgmp3-dev apt-get install -y libxml2-dev 0 0 apt-get install -y make apt-get install -y pandoc 0 0 apt-get install -y libcurl4-openssl-dev apt-get install -y libssl-dev 0 0 [ Finished: 2023-03-20 15:31:44 CET ]