[ Started: 2023-04-18 00:10:34 CEST ]
[ CARNIVAL v2.7.2 for BioC-3.17 from https://github.com/saezlab/CARNIVAL@master ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.3-3.17"
[3] "/home/omnipath/local/R/4.3"      "/opt/R-beta/lib/R/library"      
Warning: unable to access index for repository https://cran.uni-muenster.de/src/contrib:
  cannot open URL 'https://cran.uni-muenster.de/src/contrib/PACKAGES'
Warning: unable to access index for repository https://cran.uni-muenster.de/src/contrib:
  cannot open URL 'https://cran.uni-muenster.de/src/contrib/PACKAGES'
Bioconductor version 3.17 (BiocManager 1.30.20), R 4.3.0 RC (2023-04-13 r84266)
Old packages: 'zip'
trying URL 'https://cloud.r-project.org/src/contrib/zip_2.3.0.tar.gz'
Content type 'application/x-gzip' length 110488 bytes (107 KB)
==================================================
downloaded 107 KB

* installing *source* package ‘zip’ ...
** package ‘zip’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
gcc -g -O2  miniz.c zip.c unixutils.c tools/cmdzip.c -o tools/cmdzip
gcc -g -O2  miniz.c zip.c unixutils.c tools/cmdunzip.c -o tools/cmdunzip
gcc -I"/opt/R-beta/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c init.c -o init.o
gcc -I"/opt/R-beta/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c miniz.c -o miniz.o
gcc -I"/opt/R-beta/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c rzip.c -o rzip.o
gcc -I"/opt/R-beta/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c zip.c -o zip.o
gcc -I"/opt/R-beta/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c unixutils.c -o unixutils.o
gcc -shared -L/usr/local/lib -o zip.so init.o miniz.o rzip.o zip.o unixutils.o
installing via 'install.libs.R' to /home/omnipath/local/R/4.3-3.17/00LOCK-zip/00new/zip
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (zip)

The downloaded source packages are in
	‘/tmp/RtmpT6Wntb/downloaded_packages’
Bioconductor version 3.17 (BiocManager 1.30.20), R 4.3.0 RC (2023-04-13 r84266)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

Skipping 17 packages not available: BiocManager, yaml, rmarkdown, knitr, bookdown, sessioninfo, testthat, covr, RefManageR, rjson, tidyr, tibble, dplyr, igraph, lpSolve, stringr, readr
[ Finished: 2023-04-18 00:10:48 CEST ]