[ Started: 2023-05-18 00:40:02 CEST ] [ CARNIVAL v2.7.2 for BioC-3.17 from https://github.com/saezlab/CARNIVAL@master ] [1] "Libraries: " "/home/omnipath/local/R/4.3-3.17" [3] "/home/omnipath/local/R/4.3" "/opt/R-devel/lib/R/library" Bioconductor version 3.17 (BiocManager 1.30.20), R 4.3.0 (2023-04-21) Old packages: 'Biostrings', 'deldir', 'scattermore' trying URL 'https://bioconductor.org/packages/3.17/bioc/src/contrib/Biostrings_2.68.1.tar.gz' Content type 'application/x-gzip' length 12446699 bytes (11.9 MB) ================================================== downloaded 11.9 MB trying URL 'https://cloud.r-project.org/src/contrib/deldir_1.0-9.tar.gz' Content type 'application/x-gzip' length 127119 bytes (124 KB) ================================================== downloaded 124 KB trying URL 'https://cloud.r-project.org/src/contrib/scattermore_1.1.tar.gz' Content type 'application/x-gzip' length 261031 bytes (254 KB) ================================================== downloaded 254 KB * installing *source* package ‘Biostrings’ ... ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’ gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c BAB_class.c -o BAB_class.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c BitMatrix.c -o BitMatrix.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c IRanges_stubs.c -o IRanges_stubs.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c MIndex_class.c -o MIndex_class.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c PreprocessedTB_class.c -o PreprocessedTB_class.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c R_init_Biostrings.c -o R_init_Biostrings.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c RoSeqs_utils.c -o RoSeqs_utils.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c SparseList_utils.c -o SparseList_utils.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c XStringSetList_class.c -o XStringSetList_class.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c XStringSet_class.c -o XStringSet_class.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c XString_class.c -o XString_class.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c XVector_stubs.c -o XVector_stubs.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c align_needwunsQS.c -o align_needwunsQS.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c align_pairwiseAlignment.c -o align_pairwiseAlignment.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c align_utils.c -o align_utils.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c find_palindromes.c -o find_palindromes.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c gtestsim.c -o gtestsim.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c inject_code.c -o inject_code.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c letter_frequency.c -o letter_frequency.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c lowlevel_matching.c -o lowlevel_matching.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c match_PWM.c -o match_PWM.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c match_pattern.c -o match_pattern.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c match_pattern_boyermoore.c -o match_pattern_boyermoore.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c match_pattern_indels.c -o match_pattern_indels.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c match_pattern_shiftor.c -o match_pattern_shiftor.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c match_pdict.c -o match_pdict.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c match_pdict_ACtree2.c -o match_pdict_ACtree2.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c match_pdict_Twobit.c -o match_pdict_Twobit.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c match_pdict_utils.c -o match_pdict_utils.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c match_reporting.c -o match_reporting.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c matchprobes.c -o matchprobes.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c pmatchPattern.c -o pmatchPattern.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c read_fasta_files.c -o read_fasta_files.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c read_fastq_files.c -o read_fastq_files.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c replaceAt.c -o replaceAt.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c replace_letter_at.c -o replace_letter_at.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c strutils.c -o strutils.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c translate.c -o translate.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c unstrsplit_methods.c -o unstrsplit_methods.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/S4Vectors/include' -I'/home/omnipath/local/R/4.3-3.17/IRanges/include' -I'/home/omnipath/local/R/4.3-3.17/XVector/include' -I/usr/local/include -fpic -g -O2 -c xscat.c -o xscat.o gcc -shared -L/usr/local/lib -o Biostrings.so BAB_class.o BitMatrix.o IRanges_stubs.o MIndex_class.o PreprocessedTB_class.o R_init_Biostrings.o RoSeqs_utils.o S4Vectors_stubs.o SparseList_utils.o XStringSetList_class.o XStringSet_class.o XString_class.o XVector_stubs.o align_needwunsQS.o align_pairwiseAlignment.o align_utils.o find_palindromes.o gtestsim.o inject_code.o letter_frequency.o lowlevel_matching.o match_PWM.o match_pattern.o match_pattern_boyermoore.o match_pattern_indels.o match_pattern_shiftor.o match_pdict.o match_pdict_ACtree2.o match_pdict_Twobit.o match_pdict_utils.o match_reporting.o matchprobes.o pmatchPattern.o read_fasta_files.o read_fastq_files.o replaceAt.o replace_letter_at.o strutils.o translate.o unstrsplit_methods.o utils.o xscat.o installing to /home/omnipath/local/R/4.3-3.17/00LOCK-Biostrings/00new/Biostrings/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading in method for ‘twoWayAlphabetFrequencyByQuality’ with signature ‘"QualityScaledXStringSet"’: no definition for class “QualityScaledXStringSet” Creating a new generic function for ‘strsplit’ in package ‘Biostrings’ Creating a generic function for ‘ls’ from package ‘base’ in package ‘Biostrings’ Creating a new generic function for ‘pattern’ in package ‘Biostrings’ Creating a new generic function for ‘offset’ in package ‘Biostrings’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Biostrings) * installing *source* package ‘deldir’ ... ** package ‘deldir’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’ using Fortran compiler: ‘GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’ gfortran -fpic -g -O2 -c acchk.f -o acchk.o gfortran -fpic -g -O2 -c addpt.f -o addpt.o gfortran -fpic -g -O2 -c adjchk.f -o adjchk.o gfortran -fpic -g -O2 -c binsrt.f -o binsrt.o gfortran -fpic -g -O2 -c circen.f -o circen.o gfortran -fpic -g -O2 -c cross.f -o cross.o gfortran -fpic -g -O2 -c crossutil.f -o crossutil.o gfortran -fpic -g -O2 -c delet.f -o delet.o gfortran -fpic -g -O2 -c delet1.f -o delet1.o gfortran -fpic -g -O2 -c delout.f -o delout.o gfortran -fpic -g -O2 -c delseg.f -o delseg.o gfortran -fpic -g -O2 -c dirout.f -o dirout.o gfortran -fpic -g -O2 -c dirseg.f -o dirseg.o gfortran -fpic -g -O2 -c dldins.f -o dldins.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gfortran -fpic -g -O2 -c initad.f -o initad.o gfortran -fpic -g -O2 -c insrt.f -o insrt.o gfortran -fpic -g -O2 -c insrt1.f -o insrt1.o gfortran -fpic -g -O2 -c intri.f -o intri.o gfortran -fpic -g -O2 -c locn.f -o locn.o gfortran -fpic -g -O2 -c master.f -o master.o gfortran -fpic -g -O2 -c mnnd.f -o mnnd.o gfortran -fpic -g -O2 -c pred.f -o pred.o gfortran -fpic -g -O2 -c qtest.f -o qtest.o gfortran -fpic -g -O2 -c qtest1.f -o qtest1.o gfortran -fpic -g -O2 -c stoke.f -o stoke.o gfortran -fpic -g -O2 -c succ.f -o succ.o gfortran -fpic -g -O2 -c swap.f -o swap.o gfortran -fpic -g -O2 -c testeq.f -o testeq.o gfortran -fpic -g -O2 -c triar.f -o triar.o gfortran -fpic -g -O2 -c trifnd.f -o trifnd.o gcc -shared -L/usr/local/lib -o deldir.so acchk.o addpt.o adjchk.o binsrt.o circen.o cross.o crossutil.o delet.o delet1.o delout.o delseg.o dirout.o dirseg.o dldins.o init.o initad.o insrt.o insrt1.o intri.o locn.o master.o mnnd.o pred.o qtest.o qtest1.o stoke.o succ.o swap.o testeq.o triar.o trifnd.o -lgfortran -lm -lquadmath installing to /home/omnipath/local/R/4.3-3.17/00LOCK-deldir/00new/deldir/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (deldir) * installing *source* package ‘scattermore’ ... ** package ‘scattermore’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’ using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’ g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c histogram_to_rgbwt.cpp -o histogram_to_rgbwt.o g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c kernel_histogram.cpp -o kernel_histogram.o g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c kernel_rgbwt.cpp -o kernel_rgbwt.o g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c scatter_histogram.cpp -o scatter_histogram.o g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c scatter_indexed_rgbwt.cpp -o scatter_indexed_rgbwt.o g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c scatter_lines_histogram.cpp -o scatter_lines_histogram.o g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c scatter_lines_rgbwt.cpp -o scatter_lines_rgbwt.o g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c scatter_multicolor_rgbwt.cpp -o scatter_multicolor_rgbwt.o g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c scatter_singlecolor_rgbwt.cpp -o scatter_singlecolor_rgbwt.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c scattermore.c -o scattermore.o g++ -std=gnu++17 -shared -L/usr/local/lib -o scattermore.so histogram_to_rgbwt.o kernel_histogram.o kernel_rgbwt.o scatter_histogram.o scatter_indexed_rgbwt.o scatter_lines_histogram.o scatter_lines_rgbwt.o scatter_multicolor_rgbwt.o scatter_singlecolor_rgbwt.o scattermore.o installing to /home/omnipath/local/R/4.3-3.17/00LOCK-scattermore/00new/scattermore/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scattermore) The downloaded source packages are in ‘/tmp/RtmpXjKucc/downloaded_packages’ Bioconductor version 3.17 (BiocManager 1.30.20), R 4.3.0 (2023-04-21) Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TRUE` to re-install: 'BiocCheck' [ Finished: 2023-05-18 00:40:41 CEST ]