[ Started: 2023-05-24 23:58:39 CEST ] [ CARNIVAL v2.7.2 for BioC-3.17 from https://github.com/saezlab/CARNIVAL@master ] [1] "Libraries: " "/home/omnipath/local/R/4.3-3.17" [3] "/home/omnipath/local/R/4.3" "/opt/R-devel/lib/R/library" Bioconductor version 3.17 (BiocManager 1.30.20), R 4.3.0 (2023-04-21) Old packages: 'statnet.common' trying URL 'https://cloud.r-project.org/src/contrib/statnet.common_4.9.0.tar.gz' Content type 'application/x-gzip' length 339323 bytes (331 KB) ================================================== downloaded 331 KB * installing *source* package ‘statnet.common’ ... ** package ‘statnet.common’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0’ gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c logspace_utils.c -o logspace_utils.o gcc -shared -L/usr/local/lib -o statnet.common.so init.o logspace_utils.o installing to /home/omnipath/local/R/4.3-3.17/00LOCK-statnet.common/00new/statnet.common/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (statnet.common) The downloaded source packages are in ‘/tmp/RtmpvWc8b1/downloaded_packages’ Bioconductor version 3.17 (BiocManager 1.30.20), R 4.3.0 (2023-04-21) Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TRUE` to re-install: 'BiocCheck' [ Finished: 2023-05-24 23:58:48 CEST ]