[ Started: 2023-08-03 23:48:46 CEST ] [ CARNIVAL v2.7.2 for BioC-3.17 from https://github.com/saezlab/CARNIVAL@master ] Hit:1 http://de.archive.ubuntu.com/ubuntu jammy InRelease Get:2 http://security.ubuntu.com/ubuntu jammy-security InRelease [110 kB] Get:3 https://cloud.r-project.org/bin/linux/ubuntu jammy-cran40/ InRelease [3,626 B] Get:4 http://de.archive.ubuntu.com/ubuntu jammy-updates InRelease [119 kB] Get:5 http://de.archive.ubuntu.com/ubuntu jammy-backports InRelease [108 kB] Get:6 http://security.ubuntu.com/ubuntu jammy-security/main i386 Packages [300 kB] Get:7 http://security.ubuntu.com/ubuntu jammy-security/main amd64 Packages [658 kB] Get:8 http://security.ubuntu.com/ubuntu jammy-security/main amd64 DEP-11 Metadata [43.0 kB] Get:9 http://security.ubuntu.com/ubuntu jammy-security/main DEP-11 48x48 Icons [16.9 kB] Get:10 http://security.ubuntu.com/ubuntu jammy-security/main DEP-11 64x64 Icons [26.5 kB] Get:11 http://de.archive.ubuntu.com/ubuntu jammy-updates/main i386 Packages [466 kB] Get:12 http://security.ubuntu.com/ubuntu jammy-security i386 Contents (deb) [17.7 MB] Get:13 http://de.archive.ubuntu.com/ubuntu jammy-updates/main amd64 Packages [866 kB] Get:14 http://de.archive.ubuntu.com/ubuntu jammy-updates/main Translation-en [211 kB] Get:15 http://de.archive.ubuntu.com/ubuntu jammy-updates/main amd64 DEP-11 Metadata [101 kB] Get:16 http://de.archive.ubuntu.com/ubuntu jammy-updates/main DEP-11 48x48 Icons [36.1 kB] Get:17 http://de.archive.ubuntu.com/ubuntu jammy-updates/main DEP-11 64x64 Icons [55.1 kB] Get:18 http://de.archive.ubuntu.com/ubuntu jammy-updates amd64 Contents (deb) [37.4 MB] Get:19 http://security.ubuntu.com/ubuntu jammy-security amd64 Contents (deb) [34.9 MB] Get:20 http://security.ubuntu.com/ubuntu jammy-security/main amd64 c-n-f Metadata [11.2 kB] Get:21 http://security.ubuntu.com/ubuntu jammy-security/universe i386 Packages [552 kB] Get:22 http://security.ubuntu.com/ubuntu jammy-security/universe amd64 Packages [769 kB] Get:23 http://security.ubuntu.com/ubuntu jammy-security/universe Translation-en [140 kB] Get:24 http://security.ubuntu.com/ubuntu jammy-security/universe amd64 DEP-11 Metadata [39.9 kB] Get:25 http://security.ubuntu.com/ubuntu jammy-security/universe DEP-11 48x48 Icons [21.4 kB] Get:26 http://security.ubuntu.com/ubuntu jammy-security/universe DEP-11 64x64 Icons [33.9 kB] Get:27 http://security.ubuntu.com/ubuntu jammy-security/universe amd64 c-n-f Metadata [16.4 kB] Get:28 http://de.archive.ubuntu.com/ubuntu jammy-updates i386 Contents (deb) [19.6 MB] Get:29 http://de.archive.ubuntu.com/ubuntu jammy-updates/main amd64 c-n-f Metadata [15.5 kB] Get:30 http://de.archive.ubuntu.com/ubuntu jammy-updates/restricted amd64 Packages [668 kB] Get:31 http://de.archive.ubuntu.com/ubuntu jammy-updates/restricted i386 Packages [30.3 kB] Get:32 http://de.archive.ubuntu.com/ubuntu jammy-updates/universe amd64 Packages [963 kB] Get:33 http://de.archive.ubuntu.com/ubuntu jammy-updates/universe i386 Packages [646 kB] Get:34 http://de.archive.ubuntu.com/ubuntu jammy-updates/universe Translation-en [209 kB] Get:35 http://de.archive.ubuntu.com/ubuntu jammy-updates/universe amd64 DEP-11 Metadata [278 kB] Get:36 http://de.archive.ubuntu.com/ubuntu jammy-updates/universe DEP-11 48x48 Icons [190 kB] Get:37 http://de.archive.ubuntu.com/ubuntu jammy-updates/universe DEP-11 64x64 Icons [291 kB] Get:38 http://de.archive.ubuntu.com/ubuntu jammy-updates/universe amd64 c-n-f Metadata [21.5 kB] Get:39 http://de.archive.ubuntu.com/ubuntu jammy-updates/multiverse amd64 DEP-11 Metadata [940 B] Get:40 http://de.archive.ubuntu.com/ubuntu jammy-backports/main i386 Packages [33.6 kB] Get:41 http://de.archive.ubuntu.com/ubuntu jammy-backports/main amd64 Packages [40.8 kB] Get:42 http://de.archive.ubuntu.com/ubuntu jammy-backports/main amd64 DEP-11 Metadata [4,932 B] Get:43 http://de.archive.ubuntu.com/ubuntu jammy-backports/main DEP-11 48x48 Icons [16.1 kB] Get:44 http://de.archive.ubuntu.com/ubuntu jammy-backports/main DEP-11 64x64 Icons [21.3 kB] Get:45 http://de.archive.ubuntu.com/ubuntu jammy-backports/main amd64 c-n-f Metadata [388 B] Get:46 http://de.archive.ubuntu.com/ubuntu jammy-backports/universe amd64 Packages [22.3 kB] Get:47 http://de.archive.ubuntu.com/ubuntu jammy-backports/universe i386 Packages [12.8 kB] Get:48 http://de.archive.ubuntu.com/ubuntu jammy-backports/universe amd64 DEP-11 Metadata [15.5 kB] Get:49 http://de.archive.ubuntu.com/ubuntu jammy-backports/universe DEP-11 48x48 Icons [13.1 kB] Get:50 http://de.archive.ubuntu.com/ubuntu jammy-backports/universe DEP-11 64x64 Icons [22.0 kB] Get:51 http://de.archive.ubuntu.com/ubuntu jammy-backports/universe amd64 c-n-f Metadata [576 B] Fetched 118 MB in 19s (6,338 kB/s) Reading package lists... [1] "Libraries: " "/home/omnipath/local/R/4.3-3.17" [3] "/home/omnipath/local/R/4.3" "/opt/R-devel/lib/R/library" Reading package lists... Building dependency tree... Reading state information... libicu-dev is already the newest version (70.1-2). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 201 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libglpk-dev is already the newest version (5.0-1). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 201 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libgmp3-dev is already the newest version (2:6.2.1+dfsg-3ubuntu1). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 201 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libxml2-dev is already the newest version (2.9.13+dfsg-1ubuntu0.3). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 201 not to upgrade. Reading package lists... Building dependency tree... Reading state information... make is already the newest version (4.3-4.1build1). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 201 not to upgrade. Reading package lists... Building dependency tree... Reading state information... pandoc is already the newest version (2.9.2.1-3ubuntu2). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 201 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libcurl4-openssl-dev is already the newest version (7.81.0-1ubuntu1.13). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 201 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libssl-dev is already the newest version (3.0.2-0ubuntu1.10). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 201 not to upgrade. apt-get install -y libicu-dev apt-get install -y libglpk-dev 0 0 apt-get install -y libgmp3-dev apt-get install -y libxml2-dev 0 0 apt-get install -y make apt-get install -y pandoc 0 0 apt-get install -y libcurl4-openssl-dev apt-get install -y libssl-dev 0 0 [ Finished: 2023-08-03 23:49:24 CEST ]