[ Started: 2023-08-11 23:03:39 CEST ]
[ CARNIVAL v2.7.2 for BioC-3.17 from https://github.com/saezlab/CARNIVAL@master ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.3-3.17"
[3] "/home/omnipath/local/R/4.3"      "/opt/R-devel/lib/R/library"     
trying URL 'https://cran.uni-muenster.de/src/contrib/htmltools_0.5.6.tar.gz'
Content type 'application/x-gzip' length 133518 bytes (130 KB)
==================================================
downloaded 130 KB

trying URL 'https://cran.uni-muenster.de/src/contrib/progressr_0.14.0.tar.gz'
Content type 'application/x-gzip' length 211320 bytes (206 KB)
==================================================
downloaded 206 KB

trying URL 'https://cran.uni-muenster.de/src/contrib/recipes_1.0.7.tar.gz'
Content type 'application/x-gzip' length 813571 bytes (794 KB)
==================================================
downloaded 794 KB

* installing *source* package ‘htmltools’ ...
** package ‘htmltools’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c init.c -o init.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c template.c -o template.o
gcc -shared -L/usr/local/lib -o htmltools.so init.o template.o
installing to /home/omnipath/local/R/4.3-3.17/00LOCK-htmltools/00new/htmltools/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (htmltools)
* installing *source* package ‘progressr’ ...
** package ‘progressr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (progressr)
* installing *source* package ‘recipes’ ...
** package ‘recipes’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (recipes)

The downloaded source packages are in
	‘/tmp/RtmpA1KFx9/downloaded_packages’
Bioconductor version 3.17 (BiocManager 1.30.22), R 4.3.0 (2023-04-21)
Old packages: 'bslib', 'DelayedMatrixStats'
trying URL 'https://cloud.r-project.org/src/contrib/bslib_0.5.1.tar.gz'
Content type 'application/x-gzip' length 5772876 bytes (5.5 MB)
==================================================
downloaded 5.5 MB

trying URL 'https://bioconductor.org/packages/3.17/bioc/src/contrib/DelayedMatrixStats_1.22.5.tar.gz'
Content type 'application/x-gzip' length 277681 bytes (271 KB)
==================================================
downloaded 271 KB

* installing *source* package ‘bslib’ ...
** package ‘bslib’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bslib)
* installing *source* package ‘DelayedMatrixStats’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DelayedMatrixStats)

The downloaded source packages are in
	‘/tmp/RtmpA1KFx9/downloaded_packages’
Bioconductor version 3.17 (BiocManager 1.30.22), R 4.3.0 (2023-04-21)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

Skipping 1 packages ahead of CRAN: bslib
[ Finished: 2023-08-11 23:04:21 CEST ]