[ Started: 2023-08-31 00:15:10 CEST ]
[ CARNIVAL v2.7.2 for BioC-3.17 from https://github.com/saezlab/CARNIVAL@master ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.3-3.17"
[3] "/home/omnipath/local/R/4.3"      "/opt/R-devel/lib/R/library"     
trying URL 'https://cran.uni-muenster.de/src/contrib/labeling_0.4.3.tar.gz'
Content type 'application/x-gzip' length 10167 bytes
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downloaded 10167 bytes

* installing *source* package ‘labeling’ ...
** package ‘labeling’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (labeling)

The downloaded source packages are in
	‘/tmp/RtmpdXZKx2/downloaded_packages’
Bioconductor version 3.17 (BiocManager 1.30.22), R 4.3.0 (2023-04-21)
Old packages: 'dqrng', 'rematch'
trying URL 'https://cloud.r-project.org/src/contrib/dqrng_0.3.1.tar.gz'
Content type 'application/x-gzip' length 234461 bytes (228 KB)
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downloaded 228 KB

trying URL 'https://cloud.r-project.org/src/contrib/rematch_2.0.0.tar.gz'
Content type 'application/x-gzip' length 4781 bytes
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downloaded 4781 bytes

* installing *source* package ‘dqrng’ ...
** package ‘dqrng’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -I../inst/include -DSTRICT_R_HEADERS -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.17/BH/include' -I'/home/omnipath/local/R/4.3-3.17/sitmo/include' -I/usr/local/include    -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -I../inst/include -DSTRICT_R_HEADERS -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.17/BH/include' -I'/home/omnipath/local/R/4.3-3.17/sitmo/include' -I/usr/local/include    -fpic  -g -O2  -c dqrng.cpp -o dqrng.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -I../inst/include -DSTRICT_R_HEADERS -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.17/BH/include' -I'/home/omnipath/local/R/4.3-3.17/sitmo/include' -I/usr/local/include    -fpic  -g -O2  -c generateSeedVectors.cpp -o generateSeedVectors.o
g++ -std=gnu++17 -shared -L/usr/local/lib -o dqrng.so RcppExports.o dqrng.o generateSeedVectors.o
installing to /home/omnipath/local/R/4.3-3.17/00LOCK-dqrng/00new/dqrng/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (dqrng)
* installing *source* package ‘rematch’ ...
** package ‘rematch’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rematch)

The downloaded source packages are in
	‘/tmp/RtmpdXZKx2/downloaded_packages’
Bioconductor version 3.17 (BiocManager 1.30.22), R 4.3.0 (2023-04-21)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

[ Finished: 2023-08-31 00:15:33 CEST ]