[ Started: 2023-09-04 00:53:46 CEST ]
[ CARNIVAL v2.7.2 for BioC-3.17 from https://github.com/saezlab/CARNIVAL@master ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.3-3.17"
[3] "/home/omnipath/local/R/4.3"      "/opt/R-devel/lib/R/library"     
Bioconductor version 3.17 (BiocManager 1.30.22), R 4.3.0 (2023-04-21)
Old packages: 'askpass', 'dplyr'
trying URL 'https://cloud.r-project.org/src/contrib/askpass_1.2.0.tar.gz'
Content type 'application/x-gzip' length 6040 bytes
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downloaded 6040 bytes

trying URL 'https://cloud.r-project.org/src/contrib/dplyr_1.1.3.tar.gz'
Content type 'application/x-gzip' length 1083635 bytes (1.0 MB)
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downloaded 1.0 MB

* installing *source* package ‘askpass’ ...
** package ‘askpass’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c askpass.c -o askpass.o
gcc -shared -L/usr/local/lib -o askpass.so askpass.o
installing to /home/omnipath/local/R/4.3-3.17/00LOCK-askpass/00new/askpass/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (askpass)
* installing *source* package ‘dplyr’ ...
** package ‘dplyr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c chop.cpp -o chop.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c filter.cpp -o filter.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c funs.cpp -o funs.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c group_by.cpp -o group_by.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c group_data.cpp -o group_data.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c imports.cpp -o imports.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c init.cpp -o init.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c mask.cpp -o mask.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c mutate.cpp -o mutate.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c slice.cpp -o slice.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c summarise.cpp -o summarise.o
g++ -std=gnu++17 -shared -L/usr/local/lib -o dplyr.so chop.o filter.o funs.o group_by.o group_data.o imports.o init.o mask.o mutate.o slice.o summarise.o
installing to /home/omnipath/local/R/4.3-3.17/00LOCK-dplyr/00new/dplyr/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (dplyr)

The downloaded source packages are in
	‘/tmp/Rtmpdfgd2w/downloaded_packages’
Bioconductor version 3.17 (BiocManager 1.30.22), R 4.3.0 (2023-04-21)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

Skipping 2 packages ahead of CRAN: askpass, dplyr
[ Finished: 2023-09-04 00:54:05 CEST ]