[ Started: 2023-09-07 01:43:37 CEST ] [ CARNIVAL v2.7.2 for BioC-3.17 from https://github.com/saezlab/CARNIVAL@master ] [1] "Libraries: " "/home/omnipath/local/R/4.3-3.17" [3] "/home/omnipath/local/R/4.3" "/opt/R-devel/lib/R/library" Bioconductor version 3.17 (BiocManager 1.30.22), R 4.3.0 (2023-04-21) Old packages: 'credentials' trying URL 'https://cloud.r-project.org/src/contrib/credentials_2.0.1.tar.gz' Content type 'application/x-gzip' length 283844 bytes (277 KB) ================================================== downloaded 277 KB * installing *source* package ‘credentials’ ... ** package ‘credentials’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (credentials) The downloaded source packages are in ‘/tmp/RtmppzVEf5/downloaded_packages’ Bioconductor version 3.17 (BiocManager 1.30.22), R 4.3.0 (2023-04-21) Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TRUE` to re-install: 'BiocCheck' [ Finished: 2023-09-07 01:43:45 CEST ]