[ Started: 2023-09-12 01:04:03 CEST ] [ CARNIVAL v2.7.2 for BioC-3.17 from https://github.com/saezlab/CARNIVAL@master ] [1] "Libraries: " "/home/omnipath/local/R/4.3-3.17" [3] "/home/omnipath/local/R/4.3" "/opt/R-devel/lib/R/library" Bioconductor version 3.17 (BiocManager 1.30.22), R 4.3.0 (2023-04-21) Old packages: 'knitr', 'minqa', 'reticulate', 'Rhdf5lib' trying URL 'https://cloud.r-project.org/src/contrib/knitr_1.44.tar.gz' Content type 'application/x-gzip' length 898526 bytes (877 KB) ================================================== downloaded 877 KB trying URL 'https://cloud.r-project.org/src/contrib/minqa_1.2.6.tar.gz' Content type 'application/x-gzip' length 54493 bytes (53 KB) ================================================== downloaded 53 KB trying URL 'https://cloud.r-project.org/src/contrib/reticulate_1.32.0.tar.gz' Content type 'application/x-gzip' length 1602983 bytes (1.5 MB) ================================================== downloaded 1.5 MB trying URL 'https://bioconductor.org/packages/3.17/bioc/src/contrib/Rhdf5lib_1.22.1.tar.gz' Content type 'application/x-gzip' length 12083420 bytes (11.5 MB) ================================================== downloaded 11.5 MB * installing *source* package ‘knitr’ ... ** package ‘knitr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (knitr) * installing *source* package ‘minqa’ ... ** package ‘minqa’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using Fortran compiler: ‘GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ gfortran -fpic -g -O2 -c altmov.f -o altmov.o altmov.f:42:72: 42 | 10 HCOL(K)=ZERO | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) altmov.f:45:72: 45 | DO 20 K=1,NPT | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 20 at (1) altmov.f:46:72: 46 | 20 HCOL(K)=HCOL(K)+TEMP*ZMAT(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1) altmov.f:53:72: 53 | 30 GLAG(I)=BMAT(KNEW,I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1) altmov.f:57:72: 57 | 40 TEMP=TEMP+XPT(K,J)*XOPT(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1) altmov.f:59:72: 59 | DO 50 I=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 50 at (1) altmov.f:60:72: 60 | 50 GLAG(I)=GLAG(I)+TEMP*XPT(K,I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 50 at (1) altmov.f:76:72: 76 | 60 DISTSQ=DISTSQ+TEMP*TEMP | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 60 at (1) altmov.f:173:72: 173 | 90 XNEW(I)=DMAX1(SL(I),DMIN1(SU(I),TEMP)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 90 at (1) altmov.f:238:72: 238 | 140 GW=GW+GLAG(I)*W(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 140 at (1) altmov.f:249:72: 249 | 150 TEMP=TEMP+XPT(K,J)*W(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 150 at (1) altmov.f:250:72: 250 | 160 CURV=CURV+HCOL(K)*TEMP*TEMP | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 160 at (1) altmov.f:256:72: 256 | 170 XALT(I)=DMAX1(SL(I),DMIN1(SU(I),TEMP)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 170 at (1) altmov.f:269:72: 269 | 180 W(N+I)=XALT(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 180 at (1) altmov.f:276:72: 276 | 190 XALT(I)=W(N+I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 190 at (1) gfortran -fpic -g -O2 -c bigden.f -o bigden.o bigden.f:45:72: 45 | 10 W(N+K)=ZERO | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) bigden.f:49:72: 49 | DO 20 K=1,NPT | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 20 at (1) bigden.f:50:72: 50 | 20 W(N+K)=W(N+K)+TEMP*ZMAT(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1) bigden.f:67:72: 67 | 30 XOPTSQ=XOPTSQ+XOPT(I)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1) bigden.f:78:72: 78 | 40 SSTEMP=SSTEMP+DIFF*DIFF | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1) bigden.f:88:72: 88 | 60 S(I)=XPT(KSAV,I)-XOPT(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 60 at (1) bigden.f:104:72: 104 | 80 XOPTS=XOPTS+XOPT(I)*S(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 80 at (1) bigden.f:116:72: 116 | 90 DEN(I)=ZERO | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 90 at (1) bigden.f:127:72: 127 | 100 TEMPC=TEMPC+XPT(K,I)*XOPT(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1) bigden.f:132:72: 132 | 110 WVEC(K,5)=HALF*TEMPA*TEMPB | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 110 at (1) bigden.f:139:72: 139 | 120 WVEC(IP,5)=ZERO | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 120 at (1) bigden.f:147:72: 147 | 130 PROD(K,JC)=ZERO | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 130 at (1) bigden.f:151:72: 151 | 140 SUM=SUM+ZMAT(K,J)*WVEC(K,JC) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 140 at (1) bigden.f:153:72: 153 | DO 150 K=1,NPT | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 150 at (1) bigden.f:154:72: 154 | 150 PROD(K,JC)=PROD(K,JC)+SUM*ZMAT(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 150 at (1) bigden.f:159:72: 159 | 160 SUM=SUM+BMAT(K,J)*WVEC(NPT+J,JC) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 160 at (1) bigden.f:160:72: 160 | 170 PROD(K,JC)=PROD(K,JC)+SUM | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 170 at (1) bigden.f:162:72: 162 | DO 190 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 190 at (1) bigden.f:165:72: 165 | 180 SUM=SUM+BMAT(I,J)*WVEC(I,JC) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 180 at (1) bigden.f:166:72: 166 | 190 PROD(NPT+J,JC)=SUM | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 190 at (1) bigden.f:174:72: 174 | 200 SUM=SUM+PAR(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 200 at (1) bigden.f:193:72: 193 | 210 DEN(9)=DEN(9)-HALF*TEMPA | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 210 at (1) bigden.f:200:72: 200 | 220 SUM=SUM+PAR(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 220 at (1) bigden.f:234:72: 234 | 230 PAR(J+1)=PAR(2)*PAR(J-1)+PAR(3)*PAR(J-2) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 230 at (1) bigden.f:238:72: 238 | 240 SUM=SUM+DENEX(J)*PAR(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 240 at (1) bigden.f:264:72: 264 | 260 PAR(J+1)=PAR(2)*PAR(J-1)+PAR(3)*PAR(J-2) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 260 at (1) bigden.f:269:72: 269 | 270 DENMAX=DENMAX+DENEX(J)*PAR(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 270 at (1) bigden.f:272:72: 272 | DO 280 J=1,5 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 280 at (1) bigden.f:273:72: 273 | 280 VLAG(K)=VLAG(K)+PROD(K,J)*PAR(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 280 at (1) bigden.f:283:72: 283 | 290 TEMPB=TEMPB+W(I)*W(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 290 at (1) bigden.f:294:72: 294 | 300 S(I)=TAU*BMAT(KNEW,I)+ALPHA*TEMP | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 300 at (1) bigden.f:298:72: 298 | 310 SUM=SUM+XPT(K,J)*W(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 310 at (1) bigden.f:300:72: 300 | DO 320 I=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 320 at (1) bigden.f:301:72: 301 | 320 S(I)=S(I)+TEMP*XPT(K,I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 320 at (1) bigden.f:306:72: 306 | 330 DS=DS+D(I)*S(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 330 at (1) bigden.f:314:72: 314 | DO 350 J=1,5 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 350 at (1) bigden.f:315:72: 315 | 350 W(K)=W(K)+WVEC(K,J)*PAR(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 350 at (1) gfortran -fpic -g -O2 -c biglag.f -o biglag.o biglag.f:38:72: 38 | 10 HCOL(K)=ZERO | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) biglag.f:42:72: 42 | DO 20 K=1,NPT | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 20 at (1) biglag.f:43:72: 43 | 20 HCOL(K)=HCOL(K)+TEMP*ZMAT(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1) biglag.f:54:72: 54 | 30 DD=DD+D(I)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1) biglag.f:60:72: 60 | 40 SUM=SUM+XPT(K,J)*D(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1) biglag.f:63:72: 63 | DO 50 I=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 50 at (1) biglag.f:65:72: 65 | 50 GD(I)=GD(I)+SUM*XPT(K,I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 50 at (1) biglag.f:76:72: 76 | 60 DHD=DHD+D(I)*GD(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 60 at (1) biglag.f:86:72: 86 | 70 S(I)=GC(I)+TEMP*GD(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 70 at (1) biglag.f:99:72: 99 | 90 SS=SS+S(I)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 90 at (1) biglag.f:105:72: 105 | 100 W(I)=ZERO | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1) biglag.f:113:72: 113 | 110 SUM=SUM+XPT(K,J)*S(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 110 at (1) biglag.f:115:72: 115 | DO 120 I=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 120 at (1) biglag.f:116:72: 116 | 120 W(I)=W(I)+SUM*XPT(K,I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 120 at (1) biglag.f:127:72: 127 | 130 CF5=CF5+S(I)*GD(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 130 at (1) biglag.f:151:72: 151 | 140 TAUOLD=TAU | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 140 at (1) biglag.f:170:72: 170 | 150 S(I)=GC(I)+GD(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 150 at (1) gfortran -fpic -g -O2 -c bobyqa.f -o bobyqa.o gfortran -fpic -g -O2 -c bobyqb.f -o bobyqb.o bobyqb.f:68:72: 68 | 10 XOPTSQ=XOPTSQ+XOPT(I)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) bobyqb.f:97:72: 97 | DO 30 I=1,J | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 30 at (1) bobyqb.f:100:72: 100 | 30 GOPT(I)=GOPT(I)+HQ(IH)*XOPT(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1) bobyqb.f:105:72: 105 | 40 TEMP=TEMP+XPT(K,J)*XOPT(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1) bobyqb.f:107:72: 107 | DO 50 I=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 50 at (1) bobyqb.f:108:72: 108 | 50 GOPT(I)=GOPT(I)+TEMP*XPT(K,I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 50 at (1) bobyqb.f:145:72: 145 | 70 CURV=CURV+PQ(K)*XPT(K,J)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 70 at (1) bobyqb.f:167:72: 167 | 100 SUM=SUM+XPT(K,I)*XOPT(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1) bobyqb.f:170:72: 170 | DO 110 I=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 110 at (1) bobyqb.f:174:72: 174 | DO 110 J=1,I | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 110 at (1) bobyqb.f:175:72: 175 | 110 BMAT(IP,J)=BMAT(IP,J)+W(I)*VLAG(J)+VLAG(I)*W(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 110 at (1) bobyqb.f:185:72: 185 | 120 SUMW=SUMW+VLAG(K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 120 at (1) bobyqb.f:189:72: 189 | 130 SUM=SUM+VLAG(K)*XPT(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 130 at (1) bobyqb.f:191:72: 191 | DO 140 K=1,NPT | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 140 at (1) bobyqb.f:192:72: 192 | 140 BMAT(K,J)=BMAT(K,J)+SUM*ZMAT(K,JJ) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 140 at (1) bobyqb.f:193:72: 193 | DO 150 I=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 150 at (1) bobyqb.f:196:72: 196 | DO 150 J=1,I | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 150 at (1) bobyqb.f:197:72: 197 | 150 BMAT(IP,J)=BMAT(IP,J)+TEMP*W(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 150 at (1) bobyqb.f:207:72: 207 | 160 XPT(K,J)=XPT(K,J)-XOPT(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 160 at (1) bobyqb.f:208:72: 208 | DO 170 I=1,J | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 170 at (1) bobyqb.f:211:72: 211 | 170 BMAT(NPT+I,J)=BMAT(NPT+J,I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 170 at (1) bobyqb.f:217:72: 217 | 180 XOPT(I)=ZERO | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 180 at (1) bobyqb.f:246:72: 246 | 200 XOPTSQ=XOPTSQ+XOPT(I)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 200 at (1) bobyqb.f:278:72: 278 | 220 D(I)=XNEW(I)-XOPT(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 220 at (1) bobyqb.f:291:72: 291 | 240 SUM=SUM+BMAT(K,J)*D(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 240 at (1) bobyqb.f:294:72: 294 | 250 W(NPT+K)=SUMA | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 250 at (1) bobyqb.f:299:72: 299 | 260 SUM=SUM+ZMAT(K,JJ)*W(K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 260 at (1) bobyqb.f:301:72: 301 | DO 270 K=1,NPT | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 270 at (1) bobyqb.f:302:72: 302 | 270 VLAG(K)=VLAG(K)+SUM*ZMAT(K,JJ) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 270 at (1) bobyqb.f:310:72: 310 | 280 SUM=SUM+W(K)*BMAT(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 280 at (1) bobyqb.f:314:72: 314 | 290 SUM=SUM+BMAT(JP,I)*D(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 290 at (1) bobyqb.f:317:72: 317 | 300 DX=DX+D(J)*XOPT(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 300 at (1) bobyqb.f:330:72: 330 | 310 D(I)=XNEW(I)-XOPT(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 310 at (1) bobyqb.f:361:72: 361 | 330 HDIAG=HDIAG+ZMAT(K,JJ)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 330 at (1) bobyqb.f:365:72: 365 | 340 DISTSQ=DISTSQ+(XPT(K,J)-XOPT(J))**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 340 at (1) bobyqb.f:428:72: 428 | DO 410 I=1,J | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 410 at (1) bobyqb.f:432:72: 432 | 410 VQUAD=VQUAD+HQ(IH)*TEMP | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 410 at (1) bobyqb.f:434:72: 434 | 420 VQUAD=VQUAD+HALF*PQ(K)*W(NPT+K)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 420 at (1) bobyqb.f:476:72: 476 | 440 HDIAG=HDIAG+ZMAT(K,JJ)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 440 at (1) bobyqb.f:480:72: 480 | 450 DISTSQ=DISTSQ+(XPT(K,J)-XNEW(J))**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 450 at (1) bobyqb.f:487:72: 487 | 460 BIGLSQ=DMAX1(BIGLSQ,TEMP*VLAG(K)**2) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 460 at (1) bobyqb.f:504:72: 504 | DO 470 J=1,I | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 470 at (1) bobyqb.f:506:72: 506 | 470 HQ(IH)=HQ(IH)+TEMP*XPT(KNEW,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 470 at (1) bobyqb.f:509:72: 509 | DO 480 K=1,NPT | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 480 at (1) bobyqb.f:510:72: 510 | 480 PQ(K)=PQ(K)+TEMP*ZMAT(K,JJ) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 480 at (1) bobyqb.f:518:72: 518 | 490 W(I)=BMAT(KNEW,I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 490 at (1) bobyqb.f:522:72: 522 | 500 SUMA=SUMA+ZMAT(KNEW,JJ)*ZMAT(K,JJ) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 500 at (1) bobyqb.f:525:72: 525 | 510 SUMB=SUMB+XPT(K,J)*XOPT(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 510 at (1) bobyqb.f:527:72: 527 | DO 520 I=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 520 at (1) bobyqb.f:528:72: 528 | 520 W(I)=W(I)+TEMP*XPT(K,I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 520 at (1) bobyqb.f:530:72: 530 | 530 GOPT(I)=GOPT(I)+DIFF*W(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 530 at (1) bobyqb.f:541:72: 541 | DO 540 I=1,J | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 540 at (1) bobyqb.f:544:72: 544 | 540 GOPT(I)=GOPT(I)+HQ(IH)*D(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 540 at (1) bobyqb.f:548:72: 548 | 550 TEMP=TEMP+XPT(K,J)*D(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 550 at (1) bobyqb.f:550:72: 550 | DO 560 I=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 560 at (1) bobyqb.f:551:72: 551 | 560 GOPT(I)=GOPT(I)+TEMP*XPT(K,I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 560 at (1) bobyqb.f:561:72: 561 | 570 W(K)=ZERO | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 570 at (1) bobyqb.f:565:72: 565 | 580 SUM=SUM+ZMAT(K,J)*VLAG(K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 580 at (1) bobyqb.f:566:72: 566 | DO 590 K=1,NPT | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 590 at (1) bobyqb.f:567:72: 567 | 590 W(K)=W(K)+SUM*ZMAT(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 590 at (1) bobyqb.f:571:72: 571 | 600 SUM=SUM+XPT(K,J)*XOPT(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 600 at (1) bobyqb.f:573:72: 573 | 610 W(K)=SUM*W(K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 610 at (1) bobyqb.f:579:72: 579 | 620 SUM=SUM+BMAT(K,I)*VLAG(K)+XPT(K,I)*W(K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 620 at (1) bobyqb.f:590:72: 590 | 630 VLAG(NPT+I)=SUM | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 630 at (1) bobyqb.f:622:72: 622 | 660 SUM=SUM+(XPT(K,J)-XOPT(J))**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 660 at (1) gfortran -fpic -g -O2 -c lagmax.f -o lagmax.o lagmax.f:36:72: 36 | 10 SUM=SUM+H(I,J)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) lagmax.f:43:72: 43 | 30 V(J)=H(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1) lagmax.f:56:72: 56 | 40 D(I)=D(I)+H(I,J)*V(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1) lagmax.f:58:72: 58 | 50 DSQ=DSQ+D(I)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 50 at (1) lagmax.f:64:72: 64 | 60 WSQ=WSQ+D(I)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 60 at (1) lagmax.f:70:72: 70 | 70 TEMP=TEMP+H(I,J)*D(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 70 at (1) lagmax.f:72:72: 72 | 80 V(I)=RATIO*V(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 80 at (1) lagmax.f:78:72: 78 | 90 D(I)=VHW*V(I)+TEMP*D(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 90 at (1) lagmax.f:94:72: 94 | 100 SUM=SUM+H(I,J)*D(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1) lagmax.f:95:72: 95 | 110 DHD=DHD+SUM*D(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 110 at (1) lagmax.f:102:72: 102 | 120 D(I)=SCALE*D(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 120 at (1) lagmax.f:122:72: 122 | 130 SUMV=SUMV+H(I,J)*V(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 130 at (1) lagmax.f:125:72: 125 | 140 VHV=VHV+SUMV*V(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 140 at (1) lagmax.f:147:72: 147 | 150 V(I)=TEMPC*V(I)-TEMPD*G(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 150 at (1) lagmax.f:168:72: 168 | 160 D(I)=TEMPD*D(I)+TEMPV*V(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 160 at (1) g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c minqa.cpp -o minqa.o gfortran -fpic -g -O2 -c newuoa.f -o newuoa.o gfortran -fpic -g -O2 -c newuob.f -o newuob.o newuob.f:49:72: 49 | 10 XPT(K,J)=ZERO | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) newuob.f:50:72: 50 | DO 20 I=1,NDIM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 20 at (1) newuob.f:51:72: 51 | 20 BMAT(I,J)=ZERO | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1) newuob.f:53:72: 53 | 30 HQ(IH)=ZERO | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1) newuob.f:56:72: 56 | DO 40 J=1,NPTM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 40 at (1) newuob.f:57:72: 57 | 40 ZMAT(K,J)=ZERO | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1) newuob.f:98:72: 98 | 60 X(J)=XPT(NF,J)+XBASE(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 60 at (1) newuob.f:159:72: 159 | 80 XOPTSQ=XOPTSQ+XOPT(I)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 80 at (1) newuob.f:170:72: 170 | 110 DSQ=DSQ+D(I)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 110 at (1) newuob.f:191:72: 191 | 130 SUM=SUM+XPT(K,I)*XOPT(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 130 at (1) newuob.f:195:72: 195 | DO 140 I=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 140 at (1) newuob.f:201:72: 201 | DO 140 J=1,I | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 140 at (1) newuob.f:202:72: 202 | 140 BMAT(IP,J)=BMAT(IP,J)+VLAG(I)*W(J)+W(I)*VLAG(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 140 at (1) newuob.f:210:72: 210 | 150 W(I)=W(NPT+I)*ZMAT(I,K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 150 at (1) newuob.f:214:72: 214 | 160 SUM=SUM+W(I)*XPT(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 160 at (1) newuob.f:217:72: 217 | DO 170 I=1,NPT | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 170 at (1) newuob.f:218:72: 218 | 170 BMAT(I,J)=BMAT(I,J)+SUM*ZMAT(I,K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 170 at (1) newuob.f:219:72: 219 | DO 180 I=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 180 at (1) newuob.f:223:72: 223 | DO 180 J=1,I | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 180 at (1) newuob.f:224:72: 224 | 180 BMAT(IP,J)=BMAT(IP,J)+TEMP*VLAG(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 180 at (1) newuob.f:234:72: 234 | 190 XPT(K,J)=XPT(K,J)-HALF*XOPT(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 190 at (1) newuob.f:235:72: 235 | DO 200 I=1,J | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 200 at (1) newuob.f:240:72: 240 | 200 BMAT(NPT+I,J)=BMAT(NPT+J,I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 200 at (1) newuob.f:243:72: 243 | 210 XOPT(J)=ZERO | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 210 at (1) newuob.f:266:72: 266 | 220 SUM=SUM+BMAT(K,J)*D(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 220 at (1) newuob.f:268:72: 268 | 230 VLAG(K)=SUM | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 230 at (1) newuob.f:273:72: 273 | 240 SUM=SUM+ZMAT(I,K)*W(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 240 at (1) newuob.f:280:72: 280 | DO 250 I=1,NPT | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 250 at (1) newuob.f:281:72: 281 | 250 VLAG(I)=VLAG(I)+SUM*ZMAT(I,K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 250 at (1) newuob.f:287:72: 287 | 260 SUM=SUM+W(I)*BMAT(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 260 at (1) newuob.f:291:72: 291 | 270 SUM=SUM+BMAT(JP,K)*D(K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 270 at (1) newuob.f:294:72: 294 | 280 DX=DX+D(J)*XOPT(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 280 at (1) newuob.f:314:72: 314 | 300 X(I)=XBASE(I)+XNEW(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 300 at (1) newuob.f:343:72: 343 | DO 340 I=1,J | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 340 at (1) newuob.f:347:72: 347 | 340 VQUAD=VQUAD+TEMP*HQ(IH) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 340 at (1) newuob.f:349:72: 349 | 350 VQUAD=VQUAD+PQ(K)*W(K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 350 at (1) newuob.f:366:72: 366 | 360 XOPTSQ=XOPTSQ+XOPT(I)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 360 at (1) newuob.f:405:72: 405 | 380 HDIAG=HDIAG+TEMP*ZMAT(K,J)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 380 at (1) newuob.f:409:72: 409 | 390 DISTSQ=DISTSQ+(XPT(K,J)-XOPT(J))**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 390 at (1) newuob.f:427:72: 427 | DO 420 J=1,I | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 420 at (1) newuob.f:429:72: 429 | 420 HQ(IH)=HQ(IH)+TEMP*XPT(KNEW,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 420 at (1) newuob.f:438:72: 438 | DO 440 K=1,NPT | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 440 at (1) newuob.f:439:72: 439 | 440 PQ(K)=PQ(K)+TEMP*ZMAT(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 440 at (1) newuob.f:444:72: 444 | 450 XPT(KNEW,I)=XNEW(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 450 at (1) newuob.f:455:72: 455 | 700 VLAG(K)=FVAL(K)-FVAL(KOPT) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 700 at (1) newuob.f:460:72: 460 | 710 SUM=SUM+BMAT(K,I)*VLAG(K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 710 at (1) newuob.f:462:72: 462 | 720 W(I)=SUM | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 720 at (1) newuob.f:471:72: 471 | 730 GQ(I)=W(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 730 at (1) newuob.f:473:72: 473 | 740 HQ(IH)=ZERO | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 740 at (1) newuob.f:477:72: 477 | 750 W(J)=W(J)+VLAG(K)*ZMAT(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 750 at (1) newuob.f:478:72: 478 | 760 IF (J .LT. IDZ) W(J)=-W(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 760 at (1) newuob.f:481:72: 481 | DO 770 J=1,NPTM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 770 at (1) newuob.f:482:72: 482 | 770 PQ(K)=PQ(K)+ZMAT(K,J)*W(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 770 at (1) newuob.f:504:72: 504 | 470 SUM=SUM+(XPT(K,J)-XOPT(J))**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 470 at (1) newuob.f:556:72: 556 | 540 X(I)=XBASE(I)+XOPT(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 540 at (1) gfortran -fpic -g -O2 -c prelim.f -o prelim.o prelim.f:39:72: 39 | 10 XPT(K,J)=ZERO | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) prelim.f:40:72: 40 | DO 20 I=1,NDIM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 20 at (1) prelim.f:41:72: 41 | 20 BMAT(I,J)=ZERO | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1) prelim.f:43:72: 43 | 30 HQ(IH)=ZERO | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1) prelim.f:46:72: 46 | DO 40 J=1,NPT-NP | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 40 at (1) prelim.f:47:72: 47 | 40 ZMAT(K,J)=ZERO | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1) gfortran -fpic -g -O2 -c rescue.f -o rescue.o rescue.f:66:72: 66 | 10 DISTSQ=DISTSQ+XPT(K,J)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) rescue.f:70:72: 70 | DO 20 J=1,NPTM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 20 at (1) rescue.f:71:72: 71 | 20 ZMAT(K,J)=ZERO | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1) rescue.f:80:72: 80 | 30 W(J)=W(J)+PQ(K)*XPT(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1) rescue.f:81:72: 81 | DO 40 I=1,J | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 40 at (1) rescue.f:83:72: 83 | 40 HQ(IH)=HQ(IH)+W(I)*XOPT(J)+W(J)*XOPT(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1) rescue.f:103:72: 103 | DO 50 I=1,NDIM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 50 at (1) rescue.f:104:72: 104 | 50 BMAT(I,J)=ZERO | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 50 at (1) rescue.f:145:72: 145 | 70 ZMAT(K,K-NP)=TEMP | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 70 at (1) rescue.f:157:72: 157 | 90 BMAT(KNEW,J)=TEMP | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 90 at (1) rescue.f:161:72: 161 | 100 ZMAT(KNEW,J)=TEMP | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1) rescue.f:180:72: 180 | 110 W(NDIM+K)=DABS(W(NDIM+K)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 110 at (1) rescue.f:201:72: 201 | 140 W(NPT+J)=XPT(KNEW,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 140 at (1) rescue.f:208:72: 208 | 150 SUM=SUM+W(NPT+J)*XPT(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 150 at (1) rescue.f:219:72: 219 | 160 W(K)=HALF*SUM*SUM | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 160 at (1) rescue.f:227:72: 227 | 170 SUM=SUM+BMAT(K,J)*W(NPT+J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 170 at (1) rescue.f:228:72: 228 | 180 VLAG(K)=SUM | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 180 at (1) rescue.f:233:72: 233 | 190 SUM=SUM+ZMAT(K,J)*W(K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 190 at (1) rescue.f:235:72: 235 | DO 200 K=1,NPT | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 200 at (1) rescue.f:236:72: 236 | 200 VLAG(K)=VLAG(K)+SUM*ZMAT(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 200 at (1) rescue.f:242:72: 242 | 210 SUM=SUM+BMAT(K,J)*W(K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 210 at (1) rescue.f:246:72: 246 | 220 SUM=SUM+BMAT(IP,J)*W(IP) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 220 at (1) rescue.f:249:72: 249 | 230 DISTSQ=DISTSQ+XPT(KNEW,J)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 230 at (1) rescue.f:264:72: 264 | 240 HDIAG=HDIAG+ZMAT(K,J)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 240 at (1) rescue.f:271:72: 271 | 250 VLMXSQ=DMAX1(VLMXSQ,VLAG(K)**2) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 250 at (1) rescue.f:297:72: 297 | DO 270 I=1,J | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 270 at (1) rescue.f:299:72: 299 | 270 HQ(IH)=HQ(IH)+TEMP*W(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 270 at (1) rescue.f:332:72: 332 | 280 VQUAD=VQUAD+HALF*PQ(K)*TEMP*TEMP | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 280 at (1) rescue.f:359:72: 359 | 310 GOPT(I)=GOPT(I)+DIFF*BMAT(KPT,I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 310 at (1) rescue.f:363:72: 363 | 320 SUM=SUM+ZMAT(K,J)*ZMAT(KPT,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 320 at (1) gfortran -fpic -g -O2 -c trsapp.f -o trsapp.o trsapp.f:33:72: 33 | 10 D(I)=XOPT(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) trsapp.f:45:72: 45 | 30 DD=DD+D(I)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1) trsapp.f:61:72: 61 | 60 DHD=DHD+D(J)*HD(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 60 at (1) trsapp.f:82:72: 82 | 70 GG=GG+(G(I)+HS(I))**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 70 at (1) trsapp.f:98:72: 98 | 80 SS=SS+STEP(I)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 80 at (1) trsapp.f:112:72: 112 | 100 SHS=SHS+STEP(I)*HS(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1) trsapp.f:125:72: 125 | 110 D(I)=TEMPA*(G(I)+HS(I))-TEMPB*STEP(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 110 at (1) trsapp.f:133:72: 133 | 130 DHS=DHS+HD(I)*STEP(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 130 at (1) trsapp.f:156:72: 156 | 140 QSAV=QNEW | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 140 at (1) trsapp.f:176:72: 176 | 150 GG=GG+(G(I)+HS(I))**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 150 at (1) trsapp.f:188:72: 188 | 180 HD(I)=ZERO | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 180 at (1) trsapp.f:192:72: 192 | 190 TEMP=TEMP+XPT(K,J)*D(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 190 at (1) trsapp.f:194:72: 194 | DO 200 I=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 200 at (1) trsapp.f:195:72: 195 | 200 HD(I)=HD(I)+TEMP*XPT(K,I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 200 at (1) trsapp.f:198:72: 198 | DO 210 I=1,J | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 210 at (1) trsapp.f:201:72: 201 | 210 HD(I)=HD(I)+HQ(IH)*D(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 210 at (1) gfortran -fpic -g -O2 -c trsbox.f -o trsbox.o trsbox.f:71:72: 71 | 10 GNEW(I)=GOPT(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) trsbox.f:92:72: 92 | 40 STEPSQ=STEPSQ+S(I)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1) trsbox.f:163:72: 163 | 80 D(I)=D(I)+STPLEN*S(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 80 at (1) trsbox.f:304:72: 304 | 170 REDSAV=REDNEW | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 170 at (1) trsbox.f:333:72: 333 | 180 HRED(I)=CTH*HRED(I)+STH*HS(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 180 at (1) trsbox.f:351:72: 351 | 200 DSQ=DSQ+D(I)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 200 at (1) trsbox.f:362:72: 362 | DO 220 I=1,J | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 220 at (1) trsbox.f:365:72: 365 | 220 HS(I)=HS(I)+HQ(IH)*S(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 220 at (1) trsbox.f:370:72: 370 | 230 TEMP=TEMP+XPT(K,J)*S(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 230 at (1) trsbox.f:373:72: 373 | 240 HS(I)=HS(I)+TEMP*XPT(K,I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 240 at (1) trsbox.f:379:72: 379 | 260 HRED(I)=HS(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 260 at (1) gfortran -fpic -g -O2 -c trstep.f -o trstep.o trstep.f:41:72: 41 | DO 10 J=1,I | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 10 at (1) trstep.f:42:72: 42 | 10 H(I,J)=H(J,I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) trstep.f:55:72: 55 | 20 SUM=SUM+H(I,K)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1) trstep.f:68:72: 68 | 30 Z(I)=TD(I)*W(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1) trstep.f:74:72: 74 | 40 Z(J)=Z(J)+H(I,J)*W(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1) trstep.f:75:72: 75 | 50 WZ=WZ+W(J)*Z(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 50 at (1) trstep.f:82:72: 82 | 60 H(I,J)=H(I,J)-W(I)*Z(J)-W(J)*(Z(I)-WZ*W(I)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 60 at (1) trstep.f:93:72: 93 | 90 GSQ=GSQ+G(I)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 90 at (1) trstep.f:99:72: 99 | 100 SUM=SUM+GG(I)*H(I,K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1) trstep.f:100:72: 100 | DO 110 I=KP,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 110 at (1) trstep.f:101:72: 101 | 110 GG(I)=GG(I)-SUM*H(I,K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 110 at (1) trstep.f:112:72: 112 | 120 TDMIN=DMIN1(TDMIN,TD(I)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 120 at (1) trstep.f:117:72: 117 | 130 D(I)=-SCALE*GG(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 130 at (1) trstep.f:187:72: 187 | 180 D(I)=ZERO | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 180 at (1) trstep.f:200:72: 200 | 200 DTG=DTG+D(I)*GG(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 200 at (1) trstep.f:203:72: 203 | 210 D(I)=SCALE*D(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 210 at (1) trstep.f:222:72: 222 | 240 W(I)=(-GG(I)-TN(I-1)*W(I-1))/PIV(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 240 at (1) trstep.f:225:72: 225 | 250 D(I)=W(I)-TN(I)*D(I+1)/PIV(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 250 at (1) trstep.f:233:72: 233 | 260 WSQ=WSQ+PIV(I)*W(I)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 260 at (1) trstep.f:244:72: 244 | 270 D(I)=SCALE*D(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 270 at (1) trstep.f:276:72: 276 | 280 W(I)=(DSIGN(ONE,TEMP)+TEMP)/PIV(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 280 at (1) trstep.f:279:72: 279 | 290 Z(I)=W(I)-TN(I)*Z(I+1)/PIV(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 290 at (1) trstep.f:286:72: 286 | 300 DTZ=DTZ+D(I)*Z(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 300 at (1) trstep.f:296:72: 296 | 310 D(I)=D(I)+GAM*Z(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 310 at (1) trstep.f:327:72: 327 | 330 SHFMAX=DMIN1(SHFMAX,PIVOT) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 330 at (1) trstep.f:371:72: 371 | 380 SUM=SUM+D(I)*H(I,K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 380 at (1) trstep.f:372:72: 372 | DO 390 I=KP,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 390 at (1) trstep.f:373:72: 373 | 390 D(I)=D(I)-SUM*H(I,K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 390 at (1) gfortran -fpic -g -O2 -c uobyqa.f -o uobyqa.o gfortran -fpic -g -O2 -c uobyqb.f -o uobyqb.o uobyqb.f:49:72: 49 | DO 10 K=1,NPT | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 10 at (1) uobyqb.f:50:72: 50 | 10 XPT(K,I)=ZERO | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) uobyqb.f:52:72: 52 | DO 20 J=1,NPTM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 20 at (1) uobyqb.f:53:72: 53 | 20 PL(K,J)=ZERO | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1) uobyqb.f:61:72: 61 | 40 X(I)=XBASE(I)+XPT(NF+1,I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1) uobyqb.f:173:72: 173 | DO 80 I=1,J | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 80 at (1) uobyqb.f:177:72: 177 | 80 H(I,J)=PQ(IH) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 80 at (1) uobyqb.f:187:72: 187 | 90 TEMP=TEMP+D(I)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 90 at (1) uobyqb.f:201:72: 201 | 110 X(I)=XBASE(I)+XNEW(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 110 at (1) uobyqb.f:230:72: 230 | DO 150 I=1,J | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 150 at (1) uobyqb.f:234:72: 234 | 150 VQUAD=VQUAD+W(IH)*PQ(IH) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 150 at (1) uobyqb.f:238:72: 238 | 160 TEMP=TEMP+W(J)*PL(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 160 at (1) uobyqb.f:239:72: 239 | 170 VLAG(K)=TEMP | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 170 at (1) uobyqb.f:250:72: 250 | 180 TEMP=TEMP+(XPT(K,I)-XNEW(I))**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 180 at (1) uobyqb.f:252:72: 252 | 190 SUM=SUM+DABS(TEMP*TEMP*TEMP*VLAG(K)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 190 at (1) uobyqb.f:262:72: 262 | 200 XOPT(I)=XNEW(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 200 at (1) uobyqb.f:298:72: 298 | 220 SUM=SUM+(XPT(K,I)-XOPT(I))**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 220 at (1) uobyqb.f:313:72: 313 | 250 XPT(KNEW,I)=XNEW(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 250 at (1) uobyqb.f:317:72: 317 | 260 PQ(J)=PQ(J)+DIFF*PL(KNEW,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 260 at (1) uobyqb.f:322:72: 322 | 270 PL(K,J)=PL(K,J)-TEMP*PL(KNEW,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 270 at (1) uobyqb.f:343:72: 343 | DO 300 I=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 300 at (1) uobyqb.f:344:72: 344 | 300 W(K)=W(K)+(XPT(K,I)-XOPT(I))**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 300 at (1) uobyqb.f:371:72: 371 | 330 H(I,J)=TEMP | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 330 at (1) uobyqb.f:372:72: 372 | 340 SUMH=SUMH+HALF*TEMP*TEMP | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 340 at (1) uobyqb.f:382:72: 382 | 350 SUMG=SUMG+G(I)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 350 at (1) uobyqb.f:409:72: 409 | 360 XPT(K,J)=XPT(K,J)-XOPT(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 360 at (1) uobyqb.f:410:72: 410 | DO 380 I=1,J | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 380 at (1) uobyqb.f:416:72: 416 | 370 PL(K,J)=PL(K,J)+PL(K,IH)*XOPT(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 370 at (1) uobyqb.f:418:72: 418 | DO 380 K=1,NPT | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 380 at (1) uobyqb.f:419:72: 419 | 380 PL(K,I)=PL(K,I)+PL(K,IH)*XOPT(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 380 at (1) uobyqb.f:453:72: 453 | 430 X(I)=XBASE(I)+XOPT(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 430 at (1) gfortran -fpic -g -O2 -c update.f -o update.o update.f:30:72: 30 | 10 ZMAT(I,JL)=TEMP | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) update.f:61:72: 61 | 40 ZMAT(I,1)=TEMPA*ZMAT(I,1)-TEMPB*VLAG(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1) update.f:79:72: 79 | 50 ZMAT(I,JB)=SCALB*(ZMAT(I,JB)-TEMPA*W(I)-TEMPB*VLAG(I)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 50 at (1) update.f:94:72: 94 | 60 ZMAT(I,IDZ)=TEMP | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 60 at (1) update.f:104:72: 104 | DO 70 I=1,JP | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 70 at (1) gfortran -fpic -g -O2 -c updatebobyqa.f -o updatebobyqa.o updatebobyqa.f:22:72: 22 | DO 10 J=1,NPTM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 10 at (1) updatebobyqa.f:23:72: 23 | 10 ZTEST=DMAX1(ZTEST,DABS(ZMAT(K,J))) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) updatebobyqa.f:37:72: 37 | 20 ZMAT(I,1)=TEMP | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1) updatebobyqa.f:58:72: 58 | 50 ZMAT(I,1)=TEMPA*ZMAT(I,1)-TEMPB*VLAG(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 50 at (1) updatebobyqa.f:67:72: 67 | DO 60 I=1,JP | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 60 at (1) g++ -std=gnu++17 -shared -L/usr/local/lib -o minqa.so altmov.o bigden.o biglag.o bobyqa.o bobyqb.o lagmax.o minqa.o newuoa.o newuob.o prelim.o rescue.o trsapp.o trsbox.o trstep.o uobyqa.o uobyqb.o update.o updatebobyqa.o -lgfortran -lm -lquadmath installing to /home/omnipath/local/R/4.3-3.17/00LOCK-minqa/00new/minqa/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (minqa) * installing *source* package ‘reticulate’ ... ** package ‘reticulate’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c event_loop.cpp -o event_loop.o g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c libpython.cpp -o libpython.o g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c output.cpp -o output.o g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c python.cpp -o python.o g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c readline.cpp -o readline.o g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c signals.cpp -o signals.o g++ -std=gnu++17 -shared -L/usr/local/lib -o reticulate.so RcppExports.o event_loop.o libpython.o output.o python.o readline.o signals.o installing to /home/omnipath/local/R/4.3-3.17/00LOCK-reticulate/00new/reticulate/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reticulate) * installing *source* package ‘Rhdf5lib’ ... ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether the compiler supports GNU C++... yes checking whether g++ -std=gnu++17 accepts -g... yes checking for g++ -std=gnu++17 option to enable C++11 features... none needed COMPILER = gcc checking whether C compiler accepts -w... yes checking whether to use -Wl,-rpath setting... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for zlib.h... yes checking for szlib.h... yes checking for libaec.h... yes checking for SZ_BufftoBuffCompress in -lsz... yes checking for aec_buffer_encode in -lsz... yes checking for curl/curl.h... yes checking for openssl/evp.h... yes checking for openssl/hmac.h... yes checking for openssl/sha.h... yes checking for curl_global_init in -lcurl... yes checking for EVP_sha256 in -lcrypto... yes S3_VFD=--enable-ros3-vfd configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ gunzip -dc hdf5small_cxx_hl_1.10.7.tar.gz | tar xf -; cd hdf5; \ ./configure --with-pic --enable-shared=no --enable-cxx --enable-hl \ --enable-tests=no --enable-tools=no \ --with-szlib=yes --with-zlib=yes \ --enable-ros3-vfd \ --enable-sharedlib-rpath \ CC='gcc' CXX='g++ -std=gnu++17' \ CPPFLAGS='-I/usr/local/include' \ CFLAGS='-g -O2 -w -fpic' \ CXXFLAGS='-w -g -O2 -fpic' \ AR='ar' RANLIB='ranlib' \ LDFLAGS='-L/usr/local/lib'; \ make lib checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... 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(cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for shl_load... no checking for shl_load in -ldld... no checking for dlopen... yes checking whether a program can dlopen itself... yes checking whether a statically linked program can dlopen itself... no checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -std=gnu++17 -E checking for ld used by g++ -std=gnu++17... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ -std=gnu++17 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ -std=gnu++17 option to produce PIC... -fPIC -DPIC checking if g++ -std=gnu++17 PIC flag -fPIC -DPIC works... yes checking if g++ -std=gnu++17 static flag -static works... yes checking if g++ -std=gnu++17 supports -c -o file.o... yes checking if g++ -std=gnu++17 supports -c -o file.o... (cached) yes checking whether the g++ -std=gnu++17 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if we should install only statically linked executables... no checking if -Wl,-rpath should be used to link shared libs in nondefault directories... yes checking for ceil in -lm... yes checking for dlopen in -ldl... yes checking for ANSI C header files... (cached) yes checking whether time.h and sys/time.h may both be included... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking for sys/stat.h... (cached) yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking for sys/types.h... (cached) yes checking sys/file.h usability... yes checking sys/file.h presence... yes checking for sys/file.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking setjmp.h usability... yes checking setjmp.h presence... yes checking for setjmp.h... yes checking features.h usability... yes checking features.h presence... yes checking for features.h... yes checking dirent.h usability... yes checking dirent.h presence... yes checking for dirent.h... yes checking for stdint.h... (cached) yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking io.h usability... no checking io.h presence... no checking for io.h... no checking winsock2.h usability... no checking winsock2.h presence... no checking for winsock2.h... no checking sys/timeb.h usability... yes checking sys/timeb.h presence... yes checking for sys/timeb.h... yes checking for _FILE_OFFSET_BITS value needed for large files... no checking size of int8_t... 1 checking size of uint8_t... 1 checking size of int_least8_t... 1 checking size of uint_least8_t... 1 checking size of int_fast8_t... 1 checking size of uint_fast8_t... 1 checking size of int16_t... 2 checking size of uint16_t... 2 checking size of int_least16_t... 2 checking size of uint_least16_t... 2 checking size of int_fast16_t... 8 checking size of uint_fast16_t... 8 checking size of int32_t... 4 checking size of uint32_t... 4 checking size of int_least32_t... 4 checking size of uint_least32_t... 4 checking size of int_fast32_t... 8 checking size of uint_fast32_t... 8 checking size of int64_t... 8 checking size of uint64_t... 8 checking size of int_least64_t... 8 checking size of uint_least64_t... 8 checking size of int_fast64_t... 8 checking size of uint_fast64_t... 8 checking size of size_t... 8 checking size of ssize_t... 8 checking size of ptrdiff_t... 8 checking size of off_t... 8 checking size of bool... 1 checking size of time_t... 8 checking if dev_t is scalar... yes checking for dmalloc library... suppressed checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for compress2 in -lz... yes checking for compress2... yes checking szlib.h usability... yes checking szlib.h presence... yes checking for szlib.h... yes checking libaec.h usability... yes checking libaec.h presence... yes checking for libaec.h... yes checking for aec_encode in -laec... yes checking for SZ_BufftoBuffCompress in -lsz... yes checking for szlib encoder... yes checking for thread safe support... no checking whether CLOCK_MONOTONIC is declared... yes checking for tm_gmtoff in struct tm... yes checking for global timezone variable... yes checking for st_blocks in struct stat... no checking for _getvideoconfig... no checking for gettextinfo... no checking for GetConsoleScreenBufferInfo... no checking for getpwuid... yes checking for _scrsize... no checking for ioctl... yes checking for struct videoconfig... no checking for struct text_info... no checking for TIOCGWINSZ... yes checking for TIOCGETD... yes checking for library containing clock_gettime... none required checking for alarm... yes checking for clock_gettime... yes checking for difftime... yes checking for fcntl... yes checking for flock... yes checking for fork... yes checking for frexpf... yes checking for frexpl... yes checking for gethostname... yes checking for getrusage... yes checking for gettimeofday... yes checking for lstat... yes checking for rand_r... yes checking for random... yes checking for setsysinfo... no checking for signal... yes checking for longjmp... yes checking for setjmp... yes checking for siglongjmp... yes checking for sigsetjmp... no checking for sigprocmask... yes checking for snprintf... yes checking for srandom... yes checking for strdup... yes checking for symlink... yes checking for system... yes checking for strtoll... yes checking for strtoull... yes checking for tmpfile... yes checking for asprintf... yes checking for vasprintf... yes checking for vsnprintf... yes checking for waitpid... yes checking for roundf... yes checking for lroundf... yes checking for llroundf... yes checking for round... yes checking for lround... yes checking for llround... yes checking for an ANSI C-conforming const... yes checking if the compiler understands __inline__... yes checking if the compiler understands __inline... yes checking if the compiler understands inline... yes checking for __attribute__ extension... yes checking for __func__ extension... yes checking for __FUNCTION__ extension... yes checking for C99 designated initialization support... yes checking how to print long long... %ld and %lu checking enable debugging symbols... no checking enable asserts... no checking enable developer warnings... no checking profiling... no checking optimization level... high checking enable file locking... best-effort checking for internal debug output... none checking whether function stack tracking is enabled... no checking for API tracing... no checking whether a memory checking tool will be used... no checking whether internal memory allocation sanity checking is used... no checking for parallel support files... skipped checking whether O_DIRECT is declared... yes checking for posix_memalign... yes checking if the direct I/O virtual file driver (VFD) is enabled... no checking if the Mirror virtual file driver (VFD) is enabled... no checking curl/curl.h usability... yes checking curl/curl.h presence... yes checking for curl/curl.h... yes checking openssl/evp.h usability... yes checking openssl/evp.h presence... yes checking for openssl/evp.h... yes checking openssl/hmac.h usability... yes checking openssl/hmac.h presence... yes checking for openssl/hmac.h... yes checking openssl/sha.h usability... yes checking openssl/sha.h presence... yes checking for openssl/sha.h... yes checking for curl_global_init in -lcurl... yes checking for EVP_sha256 in -lcrypto... yes checking if the Read-Only S3 virtual file driver (VFD) is enabled... yes checking for libhdfs... suppressed checking for custom examples path definition... ${prefix}/share/hdf5_examples checking for custom plugin default path definition... /usr/local/hdf5/lib/plugin checking whether exception handling functions is checked during data conversions... yes checking whether data accuracy is guaranteed during data conversions... yes checking if the machine has window style path name... no checking if using special algorithm to convert long double to (unsigned) long values... no checking if using special algorithm to convert (unsigned) long to long double values... no checking if correctly converting long double to (unsigned) long long values... yes checking if correctly converting (unsigned) long long to long double values... yes checking if the system is IBM ppc64le and cannot correctly convert some long double values... no checking additional programs should be built... no checking if deprecated public symbols are available... yes checking which version of public symbols to use by default... v110 checking whether to perform strict file format checks... no checking for pread... yes checking for pwrite... yes checking whether to use pread/pwrite instead of read/write in certain VFDs... yes checking whether to have library information embedded in the executables... yes checking if alignment restrictions are strictly enforced... no configure: creating ./config.lt config.lt: creating libtool checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating src/libhdf5.settings config.status: creating Makefile config.status: creating src/Makefile config.status: creating utils/Makefile config.status: creating utils/mirror_vfd/Makefile config.status: creating bin/h5cc config.status: creating bin/Makefile config.status: creating c++/Makefile config.status: creating c++/src/Makefile config.status: creating c++/src/h5c++ config.status: creating hl/Makefile config.status: creating hl/src/Makefile config.status: creating hl/c++/Makefile config.status: creating hl/c++/src/Makefile config.status: creating src/H5config.h config.status: executing pubconf commands creating src/H5pubconf.h Post process src/libhdf5.settings config.status: executing depfiles commands config.status: executing libtool commands config.status: executing .classes commands SUMMARY OF THE HDF5 CONFIGURATION ================================= General Information: ------------------- HDF5 Version: 1.10.7 Configured on: Tue Sep 12 01:04:59 CEST 2023 Configured by: omnipath@saezlab Host system: x86_64-unknown-linux-gnu Uname information: Linux saezlab 6.0.0-1008-oem #8-Ubuntu SMP PREEMPT_DYNAMIC Wed Nov 16 17:31:27 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux Byte sex: little-endian Installation point: /tmp/RtmphIv2vt/R.INSTALL20e1aa13078b0b/Rhdf5lib/src/hdf5/hdf5 Compiling Options: ------------------ Build Mode: production Debugging Symbols: no Asserts: no Profiling: no Optimization Level: high Linking Options: ---------------- Libraries: static Statically Linked Executables: LDFLAGS: -L/usr/local/lib H5_LDFLAGS: AM_LDFLAGS: Extra libraries: -lcrypto -lcurl -lsz -laec -lz -ldl -lm Archiver: ar AR_FLAGS: cr Ranlib: ranlib Languages: ---------- C: yes C Compiler: /usr/bin/gcc CPPFLAGS: -I/usr/local/include H5_CPPFLAGS: -D_GNU_SOURCE -D_POSIX_C_SOURCE=200809L -DNDEBUG -UH5_DEBUG_API AM_CPPFLAGS: C Flags: -g -O2 -w -fpic H5 C Flags: -std=c99 -Wno-c++-compat -Wno-format-nonliteral -Wshadow -Wundef -Wwrite-strings -Wlarger-than=2560 -Wlogical-op -Wframe-larger-than=16384 -Wpacked-bitfield-compat -Wsync-nand -Wdouble-promotion -Wtrampolines -Wstack-usage=8192 -Wmaybe-uninitialized -Wdate-time -Warray-bounds=2 -Wc99-c11-compat -Wduplicated-cond -Whsa -Wnormalized -Wunused-const-variable -Walloca -Walloc-zero -Wduplicated-branches -Wimplicit-fallthrough=5 -Wrestrict -Wattribute-alias -Wshift-overflow=2 -Wattribute-alias=2 -Wmissing-profile -fstdarg-opt -s -Wno-aggregate-return -Wno-inline -Wno-missing-format-attribute -Wno-missing-noreturn -Wno-overlength-strings -Wno-jump-misses-init -Wno-suggest-attribute=const -Wno-suggest-attribute=noreturn -Wno-suggest-attribute=pure -Wno-suggest-attribute=format -Wno-suggest-attribute=cold -Wno-suggest-attribute=malloc -O3 -Werror=bad-function-cast -Werror=declaration-after-statement -Werror=implicit-function-declaration -Werror=missing-declarations -Werror=missing-prototypes -Werror=nested-externs -Werror=old-style-definition -Werror=packed -Werror=pointer-sign -Werror=pointer-to-int-cast -Werror=redundant-decls -Werror=strict-prototypes -Werror=switch -Wunused-function -Wformat -Werror=incompatible-pointer-types -Werror=shadow -Wcast-function-type -Wmaybe-uninitialized AM C Flags: Shared C Library: no Static C Library: yes Fortran: no C++: yes C++ Compiler: /usr/bin/g++ -std=gnu++17 C++ Flags: -w -g -O2 -fpic H5 C++ Flags: -Wall -Wconversion -Wctor-dtor-privacy -Wextra -Wfloat-equal -Wformat=2 -Winit-self -Winvalid-pch -Wmissing-include-dirs -Wno-format-nonliteral -Wnon-virtual-dtor -Woverloaded-virtual -Wreorder -Wshadow -Wsign-promo -Wundef -Wwrite-strings -pedantic -Wlarger-than=2560 -Wlogical-op -Wframe-larger-than=16384 -Wpacked-bitfield-compat -Wsync-nand -Wdouble-promotion -Wtrampolines -Wstack-usage=8192 -Wmaybe-uninitialized -Wdate-time -Wopenmp-simd -Warray-bounds=2 -Wduplicated-cond -Whsa -Wnormalized -Wunused-const-variable -Walloca -Walloc-zero -Wduplicated-branches -Wimplicit-fallthrough=5 -Wrestrict -Wattribute-alias -Wshift-overflow=2 -Wattribute-alias=2 -Wmissing-profile -fstdarg-opt -s -O3 -Wcast-align -Wmissing-declarations -Werror=packed -Werror=redundant-decls -Werror=switch -Wunused-but-set-variable -Werror=unused-function -Werror=unused-variable -Wunused-parameter -Werror=shadow AM C++ Flags: Shared C++ Library: no Static C++ Library: yes Java: no Features: --------- Parallel HDF5: no Parallel Filtered Dataset Writes: no Large Parallel I/O: no High-level library: yes Build HDF5 Tests: no Build HDF5 Tools: no Threadsafety: no Default API mapping: v110 With deprecated public symbols: yes I/O filters (external): deflate(zlib),szip(encoder) MPE: no Direct VFD: no Mirror VFD: no (Read-Only) S3 VFD: yes (Read-Only) HDFS VFD: no dmalloc: no Packages w/ extra debug output: none API tracing: no Using memory checker: no Memory allocation sanity checks: no Function stack tracing: no Use file locking: best-effort Strict file format checks: no Optimization instrumentation: no make[1]: Entering directory '/tmp/RtmphIv2vt/R.INSTALL20e1aa13078b0b/Rhdf5lib/src/hdf5' for d in src . c++ hl; do \ if test $d != .; then \ (cd $d && make lib) || exit 1; \ fi; \ done make[2]: Entering directory '/tmp/RtmphIv2vt/R.INSTALL20e1aa13078b0b/Rhdf5lib/src/hdf5/src' make[3]: Entering directory '/tmp/RtmphIv2vt/R.INSTALL20e1aa13078b0b/Rhdf5lib/src/hdf5/src' CC H5.lo CC H5checksum.lo CC H5dbg.lo CC H5system.lo CC H5timer.lo CC H5trace.lo CC H5A.lo CC H5Abtree2.lo CC H5Adense.lo CC H5Adeprec.lo CC H5Aint.lo CC H5Atest.lo CC H5AC.lo CC H5ACdbg.lo CC H5ACproxy_entry.lo CC H5B.lo CC H5Bcache.lo CC H5Bdbg.lo CC H5B2.lo CC H5B2cache.lo CC H5B2dbg.lo CC H5B2hdr.lo CC H5B2int.lo CC H5B2internal.lo CC H5B2leaf.lo CC H5B2stat.lo CC H5B2test.lo CC H5C.lo CC H5Cdbg.lo CC H5Cepoch.lo CC H5Cimage.lo CC H5Clog.lo CC H5Clog_json.lo CC H5Clog_trace.lo CC H5Cprefetched.lo CC H5Cquery.lo CC H5Ctag.lo CC H5Ctest.lo CC H5CS.lo CC H5CX.lo CC H5D.lo CC H5Dbtree.lo CC H5Dbtree2.lo CC H5Dchunk.lo CC H5Dcompact.lo CC H5Dcontig.lo CC H5Ddbg.lo CC H5Ddeprec.lo CC H5Dearray.lo CC H5Defl.lo CC H5Dfarray.lo CC H5Dfill.lo CC H5Dint.lo CC H5Dio.lo CC H5Dlayout.lo CC H5Dnone.lo CC H5Doh.lo CC H5Dscatgath.lo CC H5Dselect.lo CC H5Dsingle.lo CC H5Dtest.lo CC H5Dvirtual.lo CC H5E.lo CC H5Edeprec.lo CC H5Eint.lo CC H5EA.lo CC H5EAcache.lo CC H5EAdbg.lo CC H5EAdblkpage.lo CC H5EAdblock.lo CC H5EAhdr.lo CC H5EAiblock.lo CC H5EAint.lo CC H5EAsblock.lo CC H5EAstat.lo CC H5EAtest.lo CC H5F.lo CC H5Faccum.lo CC H5Fcwfs.lo CC H5Fdbg.lo CC H5Fdeprec.lo CC H5Fefc.lo CC H5Ffake.lo CC H5Fint.lo CC H5Fio.lo CC H5Fmount.lo CC H5Fquery.lo CC H5Fsfile.lo CC H5Fspace.lo CC H5Fsuper.lo CC H5Fsuper_cache.lo CC H5Ftest.lo CC H5FA.lo CC H5FAcache.lo CC H5FAdbg.lo CC H5FAdblock.lo CC H5FAdblkpage.lo CC H5FAhdr.lo CC H5FAint.lo CC H5FAstat.lo CC H5FAtest.lo CC H5FD.lo CC H5FDcore.lo CC H5FDfamily.lo CC H5FDhdfs.lo CC H5FDint.lo CC H5FDlog.lo CC H5FDmulti.lo CC H5FDsec2.lo CC H5FDspace.lo CC H5FDsplitter.lo CC H5FDstdio.lo CC H5FDtest.lo CC H5FL.lo CC H5FO.lo CC H5FS.lo CC H5FScache.lo CC H5FSdbg.lo CC H5FSint.lo CC H5FSsection.lo CC H5FSstat.lo CC H5FStest.lo CC H5G.lo CC H5Gbtree2.lo CC H5Gcache.lo CC H5Gcompact.lo CC H5Gdense.lo CC H5Gdeprec.lo CC H5Gent.lo CC H5Gint.lo CC H5Glink.lo CC H5Gloc.lo CC H5Gname.lo CC H5Gnode.lo CC H5Gobj.lo CC H5Goh.lo CC H5Groot.lo CC H5Gstab.lo CC H5Gtest.lo CC H5Gtraverse.lo CC H5HF.lo CC H5HFbtree2.lo CC H5HFcache.lo CC H5HFdbg.lo CC H5HFdblock.lo CC H5HFdtable.lo CC H5HFhdr.lo CC H5HFhuge.lo CC H5HFiblock.lo CC H5HFiter.lo CC H5HFman.lo CC H5HFsection.lo CC H5HFspace.lo CC H5HFstat.lo CC H5HFtest.lo CC H5HFtiny.lo CC H5HG.lo CC H5HGcache.lo CC H5HGdbg.lo CC H5HGquery.lo CC H5HL.lo CC H5HLcache.lo CC H5HLdbg.lo CC H5HLint.lo CC H5HLprfx.lo CC H5HLdblk.lo CC H5HP.lo CC H5I.lo CC H5Itest.lo CC H5L.lo CC H5Lexternal.lo CC H5make_libsettings.o CCLD H5make_libsettings LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo -L/usr/local/lib | \ sed -e 's/-L/:/g' -e 's/ //g'`" \ ./H5make_libsettings > H5lib_settings.c || \ (test $HDF5_Make_Ignore && echo "*** Error ignored") || \ (rm -f H5lib_settings.c ; exit 1) CC H5lib_settings.lo CC H5MF.lo CC H5MFaggr.lo CC H5MFdbg.lo CC H5MFsection.lo CC H5MM.lo CC H5MP.lo CC H5MPtest.lo CC H5O.lo CC H5Odeprec.lo CC H5Oainfo.lo CC H5Oalloc.lo CC H5Oattr.lo CC H5Oattribute.lo CC H5Obogus.lo CC H5Obtreek.lo CC H5Ocache.lo CC H5Ocache_image.lo CC H5Ochunk.lo CC H5Ocont.lo CC H5Ocopy.lo CC H5Odbg.lo CC H5Odrvinfo.lo CC H5Odtype.lo CC H5Oefl.lo CC H5Ofill.lo CC H5Oflush.lo CC H5Ofsinfo.lo CC H5Oginfo.lo CC H5Oint.lo CC H5Olayout.lo CC H5Olinfo.lo CC H5Olink.lo CC H5Omessage.lo CC H5Omtime.lo CC H5Oname.lo CC H5Onull.lo CC H5Opline.lo CC H5Orefcount.lo CC H5Osdspace.lo CC H5Oshared.lo CC H5Oshmesg.lo CC H5Ostab.lo CC H5Otest.lo CC H5Ounknown.lo CC H5P.lo CC H5Pacpl.lo CC H5Pdapl.lo CC H5Pdcpl.lo CC H5Pdeprec.lo CC H5Pdxpl.lo CC H5Pencdec.lo CC H5Pfapl.lo CC H5Pfcpl.lo CC H5Pfmpl.lo CC H5Pgcpl.lo CC H5Pint.lo CC H5Plapl.lo CC H5Plcpl.lo CC H5Pocpl.lo CC H5Pocpypl.lo CC H5Pstrcpl.lo CC H5Ptest.lo CC H5PB.lo CC H5PL.lo CC H5PLint.lo CC H5PLpath.lo CC H5PLplugin_cache.lo CC H5R.lo CC H5Rint.lo CC H5Rdeprec.lo CC H5UC.lo CC H5RS.lo CC H5S.lo CC H5Sall.lo CC H5Sdbg.lo CC H5Shyper.lo CC H5Snone.lo CC H5Spoint.lo CC H5Sselect.lo CC H5Stest.lo CC H5SL.lo CC H5SM.lo CC H5SMbtree2.lo CC H5SMcache.lo CC H5SMmessage.lo CC H5SMtest.lo CC H5ST.lo CC H5T.lo CC H5Tarray.lo CC H5Tbit.lo CC H5Tcommit.lo CC H5Tcompound.lo CC H5Tconv.lo CC H5Tcset.lo CC H5Tdbg.lo CC H5Tdeprec.lo CC H5Tenum.lo CC H5Tfields.lo CC H5Tfixed.lo CC H5Tfloat.lo CC H5detect.o CCLD H5detect LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo -L/usr/local/lib | \ sed -e 's/-L/:/g' -e 's/ //g'`" \ ./H5detect > H5Tinit.c || \ (test $HDF5_Make_Ignore && echo "*** Error ignored") || \ (rm -f H5Tinit.c ; exit 1) CC H5Tinit.lo CC H5Tnative.lo CC H5Toffset.lo CC H5Toh.lo CC H5Topaque.lo CC H5Torder.lo CC H5Tpad.lo CC H5Tprecis.lo CC H5Tstrpad.lo CC H5Tvisit.lo CC H5Tvlen.lo CC H5TS.lo CC H5VM.lo CC H5WB.lo CC H5Z.lo CC H5Zdeflate.lo CC H5Zfletcher32.lo CC H5Znbit.lo CC H5Zshuffle.lo CC H5Zscaleoffset.lo CC H5Zszip.lo CC H5Ztrans.lo CC H5FDros3.lo CC H5FDs3comms.lo CCLD libhdf5.la make[3]: Leaving directory '/tmp/RtmphIv2vt/R.INSTALL20e1aa13078b0b/Rhdf5lib/src/hdf5/src' make[2]: Leaving directory '/tmp/RtmphIv2vt/R.INSTALL20e1aa13078b0b/Rhdf5lib/src/hdf5/src' make[2]: Entering directory '/tmp/RtmphIv2vt/R.INSTALL20e1aa13078b0b/Rhdf5lib/src/hdf5/c++' make[3]: Entering directory '/tmp/RtmphIv2vt/R.INSTALL20e1aa13078b0b/Rhdf5lib/src/hdf5/c++' make[3]: Nothing to be done for 'build-lib'. make[3]: Leaving directory '/tmp/RtmphIv2vt/R.INSTALL20e1aa13078b0b/Rhdf5lib/src/hdf5/c++' + cd src + make lib make[3]: Entering directory '/tmp/RtmphIv2vt/R.INSTALL20e1aa13078b0b/Rhdf5lib/src/hdf5/c++/src' make[4]: Entering directory '/tmp/RtmphIv2vt/R.INSTALL20e1aa13078b0b/Rhdf5lib/src/hdf5/c++/src' CXX H5Exception.lo CXX H5IdComponent.lo CXX H5DataSpace.lo CXX H5PropList.lo CXX H5Library.lo CXX H5FaccProp.lo CXX H5FcreatProp.lo CXX H5LcreatProp.lo CXX H5LaccProp.lo CXX H5DaccProp.lo CXX H5DxferProp.lo CXX H5DcreatProp.lo CXX H5Location.lo CXX H5AbstractDs.lo CXX H5Attribute.lo CXX H5Object.lo CXX H5OcreatProp.lo CXX H5DataType.lo CXX H5AtomType.lo CXX H5PredType.lo CXX H5EnumType.lo CXX H5IntType.lo CXX H5FloatType.lo CXX H5StrType.lo CXX H5ArrayType.lo CXX H5VarLenType.lo CXX H5CompType.lo CXX H5DataSet.lo CXX H5CommonFG.lo CXX H5Group.lo CXX H5File.lo CXXLD libhdf5_cpp.la make[4]: Leaving directory '/tmp/RtmphIv2vt/R.INSTALL20e1aa13078b0b/Rhdf5lib/src/hdf5/c++/src' make[3]: Leaving directory '/tmp/RtmphIv2vt/R.INSTALL20e1aa13078b0b/Rhdf5lib/src/hdf5/c++/src' make[2]: Leaving directory '/tmp/RtmphIv2vt/R.INSTALL20e1aa13078b0b/Rhdf5lib/src/hdf5/c++' make[2]: Entering directory '/tmp/RtmphIv2vt/R.INSTALL20e1aa13078b0b/Rhdf5lib/src/hdf5/hl' make[3]: Entering directory '/tmp/RtmphIv2vt/R.INSTALL20e1aa13078b0b/Rhdf5lib/src/hdf5/hl' make[3]: Nothing to be done for 'build-lib'. make[3]: Leaving directory '/tmp/RtmphIv2vt/R.INSTALL20e1aa13078b0b/Rhdf5lib/src/hdf5/hl' + cd src + make lib make[3]: Entering directory '/tmp/RtmphIv2vt/R.INSTALL20e1aa13078b0b/Rhdf5lib/src/hdf5/hl/src' make[4]: Entering directory '/tmp/RtmphIv2vt/R.INSTALL20e1aa13078b0b/Rhdf5lib/src/hdf5/hl/src' CC H5DO.lo CC H5DS.lo CC H5IM.lo CC H5LT.lo CC H5LTanalyze.lo CC H5LTparse.lo CC H5PT.lo CC H5TB.lo CC H5LD.lo CCLD libhdf5_hl.la make[4]: Leaving directory '/tmp/RtmphIv2vt/R.INSTALL20e1aa13078b0b/Rhdf5lib/src/hdf5/hl/src' make[3]: Leaving directory '/tmp/RtmphIv2vt/R.INSTALL20e1aa13078b0b/Rhdf5lib/src/hdf5/hl/src' + cd c++ + make lib make[3]: Entering directory '/tmp/RtmphIv2vt/R.INSTALL20e1aa13078b0b/Rhdf5lib/src/hdf5/hl/c++' make[4]: Entering directory '/tmp/RtmphIv2vt/R.INSTALL20e1aa13078b0b/Rhdf5lib/src/hdf5/hl/c++' make[4]: Nothing to be done for 'build-lib'. make[4]: Leaving directory '/tmp/RtmphIv2vt/R.INSTALL20e1aa13078b0b/Rhdf5lib/src/hdf5/hl/c++' + cd src + make lib make[4]: Entering directory '/tmp/RtmphIv2vt/R.INSTALL20e1aa13078b0b/Rhdf5lib/src/hdf5/hl/c++/src' make[5]: Entering directory '/tmp/RtmphIv2vt/R.INSTALL20e1aa13078b0b/Rhdf5lib/src/hdf5/hl/c++/src' CXX H5PacketTable.lo CXXLD libhdf5_hl_cpp.la make[5]: Leaving directory '/tmp/RtmphIv2vt/R.INSTALL20e1aa13078b0b/Rhdf5lib/src/hdf5/hl/c++/src' make[4]: Leaving directory '/tmp/RtmphIv2vt/R.INSTALL20e1aa13078b0b/Rhdf5lib/src/hdf5/hl/c++/src' make[3]: Leaving directory '/tmp/RtmphIv2vt/R.INSTALL20e1aa13078b0b/Rhdf5lib/src/hdf5/hl/c++' make[2]: Leaving directory '/tmp/RtmphIv2vt/R.INSTALL20e1aa13078b0b/Rhdf5lib/src/hdf5/hl' make[1]: Leaving directory '/tmp/RtmphIv2vt/R.INSTALL20e1aa13078b0b/Rhdf5lib/src/hdf5' mkdir -p "/home/omnipath/local/R/4.3-3.17/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" cp "hdf5/src"/*.h "/home/omnipath/local/R/4.3-3.17/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" cp "hdf5/c++/src"/*.h "/home/omnipath/local/R/4.3-3.17/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" cp "hdf5/hl/src"/*.h "/home/omnipath/local/R/4.3-3.17/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" cp "hdf5/hl/c++/src"/*.h "/home/omnipath/local/R/4.3-3.17/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" cp "hdf5/src"/libhdf5.settings "/home/omnipath/local/R/4.3-3.17/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" mkdir -p "/home/omnipath/local/R/4.3-3.17/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/" cp "hdf5/src/.libs/libhdf5.a" "/home/omnipath/local/R/4.3-3.17/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/" cp "hdf5/c++/src/.libs/libhdf5_cpp.a" "/home/omnipath/local/R/4.3-3.17/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/" cp "hdf5/hl/src/.libs/libhdf5_hl.a" "/home/omnipath/local/R/4.3-3.17/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/" cp "hdf5/hl/c++/src/.libs/libhdf5_hl_cpp.a" "/home/omnipath/local/R/4.3-3.17/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/" gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I/home/omnipath/local/R/4.3-3.17/00LOCK-Rhdf5lib/00new/Rhdf5lib/include -I/usr/local/include -fpic -g -O2 -c Rhdf5lib.c -o Rhdf5lib.o gcc -shared -L/usr/local/lib -o Rhdf5lib.so Rhdf5lib.o /home/omnipath/local/R/4.3-3.17/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/libhdf5.a -lsz -laec -lz installing to /home/omnipath/local/R/4.3-3.17/00LOCK-Rhdf5lib/00new/Rhdf5lib/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rhdf5lib) The downloaded source packages are in ‘/tmp/RtmpgL3amZ/downloaded_packages’ Bioconductor version 3.17 (BiocManager 1.30.22), R 4.3.0 (2023-04-21) Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TRUE` to re-install: 'BiocCheck' Skipping 1 packages ahead of CRAN: knitr [ Finished: 2023-09-12 01:07:31 CEST ]