[ Started: 2023-10-07 07:49:56 CEST ]
[ CARNIVAL v2.7.2 for BioC-3.17 from https://github.com/saezlab/CARNIVAL@master ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.3-3.17"
[3] "/home/omnipath/local/R/4.3"      "/opt/R-devel/lib/R/library"     
trying URL 'https://cran.uni-muenster.de/src/contrib/htmltools_0.5.6.1.tar.gz'
Content type 'application/x-gzip' length 133590 bytes (130 KB)
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downloaded 130 KB

trying URL 'https://cran.uni-muenster.de/src/contrib/testthat_3.2.0.tar.gz'
Content type 'application/x-gzip' length 739497 bytes (722 KB)
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downloaded 722 KB

* installing *source* package ‘htmltools’ ...
** package ‘htmltools’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c init.c -o init.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c template.c -o template.o
gcc -shared -L/usr/local/lib -o htmltools.so init.o template.o
installing to /home/omnipath/local/R/4.3-3.17/00LOCK-htmltools/00new/htmltools/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (htmltools)
* installing *source* package ‘testthat’ ...
** package ‘testthat’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT  -I/usr/local/include    -fpic  -g -O2  -c init.c -o init.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT  -I/usr/local/include    -fpic  -g -O2  -c reassign.c -o reassign.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT  -I/usr/local/include    -fpic  -g -O2  -c test-catch.cpp -o test-catch.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT  -I/usr/local/include    -fpic  -g -O2  -c test-example.cpp -o test-example.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT  -I/usr/local/include    -fpic  -g -O2  -c test-runner.cpp -o test-runner.o
g++ -std=gnu++17 -shared -L/usr/local/lib -o testthat.so init.o reassign.o test-catch.o test-example.o test-runner.o
installing to /home/omnipath/local/R/4.3-3.17/00LOCK-testthat/00new/testthat/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (testthat)

The downloaded source packages are in
	‘/tmp/RtmpeFAPXc/downloaded_packages’
Bioconductor version 3.17 (BiocManager 1.30.22), R 4.3.0 (2023-04-21)
Bioconductor version 3.17 (BiocManager 1.30.22), R 4.3.0 (2023-04-21)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

[ Finished: 2023-10-07 07:50:32 CEST ]