[ Started: 2023-11-30 11:53:21 CET ]
[ CARNIVAL v2.7.2 for BioC-3.17 from https://github.com/saezlab/CARNIVAL@master ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.3-3.17"
[3] "/home/omnipath/local/R/4.3"      "/usr/lib/R/library"             
trying URL 'https://cran.uni-muenster.de/src/contrib/dqrng_0.3.2.tar.gz'
Content type 'application/x-gzip' length 234476 bytes (228 KB)
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downloaded 228 KB

* installing *source* package ‘dqrng’ ...
** package ‘dqrng’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -DSTRICT_R_HEADERS -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.17/BH/include' -I'/home/omnipath/local/R/4.3-3.17/sitmo/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -DSTRICT_R_HEADERS -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.17/BH/include' -I'/home/omnipath/local/R/4.3-3.17/sitmo/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c dqrng.cpp -o dqrng.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -DSTRICT_R_HEADERS -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.17/BH/include' -I'/home/omnipath/local/R/4.3-3.17/sitmo/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c generateSeedVectors.cpp -o generateSeedVectors.o
g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -o dqrng.so RcppExports.o dqrng.o generateSeedVectors.o -L/usr/lib/R/lib -lR
installing to /home/omnipath/local/R/4.3-3.17/00LOCK-dqrng/00new/dqrng/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (dqrng)

The downloaded source packages are in
	‘/tmp/RtmpueugId/downloaded_packages’
Bioconductor version '3.17' is out-of-date; the current release version '3.18'
  is available with R version '4.3'; see https://bioconductor.org/install
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.17 (BiocManager 1.30.22), R 4.3.1 (2023-06-16)
Old packages: 'RSNNS'
trying URL 'https://cloud.r-project.org/src/contrib/RSNNS_0.4-17.tar.gz'
Content type 'application/x-gzip' length 976329 bytes (953 KB)
==================================================
downloaded 953 KB

* installing *source* package ‘RSNNS’ ...
** package ‘RSNNS’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
gcc -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c RSNNS_init.c -o RSNNS_init.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c SnnsCLib.cpp -o SnnsCLib.o
gcc -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c SnnsCLibGenericR_util.c -o SnnsCLibGenericR_util.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c SnnsCLibWrapper.cpp -o SnnsCLibWrapper.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c art_ui.cpp -o art_ui.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c arttr_f.cpp -o arttr_f.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c bn_JordElm.cpp -o bn_JordElm.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c bn_art1.cpp -o bn_art1.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c bn_art2.cpp -o bn_art2.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c bn_artmap.cpp -o bn_artmap.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c bn_assoz.cpp -o bn_assoz.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c bn_kohonen.cpp -o bn_kohonen.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c cc_display.cpp -o cc_display.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c cc_glob.cpp -o cc_glob.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c cc_learn.cpp -o cc_learn.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c cc_modify.cpp -o cc_modify.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c cc_prune.cpp -o cc_prune.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c dlvq_learn.cpp -o dlvq_learn.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c func_tbl.cpp -o func_tbl.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c init_f.cpp -o init_f.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c kernel.cpp -o kernel.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c kr_JordElm.cpp -o kr_JordElm.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c kr_amap.cpp -o kr_amap.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c kr_art.cpp -o kr_art.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c kr_art1.cpp -o kr_art1.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c kr_art2.cpp -o kr_art2.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c kr_funcs.cpp -o kr_funcs.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c kr_inversion.cpp -o kr_inversion.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c kr_io.cpp -o kr_io.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c kr_mem.cpp -o kr_mem.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c kr_newpattern.cpp -o kr_newpattern.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c kr_pat_parse.cpp -o kr_pat_parse.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c kr_pat_scan.cpp -o kr_pat_scan.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c kr_td.cpp -o kr_td.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c kr_ui.cpp -o kr_ui.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c learn_f.cpp -o learn_f.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c matrix.cpp -o matrix.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c prun_f.cpp -o prun_f.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c remap_f.cpp -o remap_f.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c scaled_conj_grad.cpp -o scaled_conj_grad.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c stochastic_learn_f.cpp -o stochastic_learn_f.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c tacoma_learn.cpp -o tacoma_learn.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c tbl_func.cpp -o tbl_func.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c trans_f.cpp -o trans_f.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c u_lrand48.cpp -o u_lrand48.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c update_f.cpp -o update_f.o
g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -o RSNNS.so RSNNS_init.o SnnsCLib.o SnnsCLibGenericR_util.o SnnsCLibWrapper.o art_ui.o arttr_f.o bn_JordElm.o bn_art1.o bn_art2.o bn_artmap.o bn_assoz.o bn_kohonen.o cc_display.o cc_glob.o cc_learn.o cc_modify.o cc_prune.o dlvq_learn.o func_tbl.o init_f.o kernel.o kr_JordElm.o kr_amap.o kr_art.o kr_art1.o kr_art2.o kr_funcs.o kr_inversion.o kr_io.o kr_mem.o kr_newpattern.o kr_pat_parse.o kr_pat_scan.o kr_td.o kr_ui.o learn_f.o matrix.o prun_f.o remap_f.o scaled_conj_grad.o stochastic_learn_f.o tacoma_learn.o tbl_func.o trans_f.o u_lrand48.o update_f.o -L/usr/lib/R/lib -lR
installing to /home/omnipath/local/R/4.3-3.17/00LOCK-RSNNS/00new/RSNNS/libs
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RSNNS)

The downloaded source packages are in
	‘/tmp/RtmpueugId/downloaded_packages’
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.17 (BiocManager 1.30.22), R 4.3.1 (2023-06-16)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

[ Finished: 2023-11-30 11:54:27 CET ]