[ Started: 2023-12-11 11:54:52 CET ] [ CARNIVAL v2.7.2 for BioC-3.17 from https://github.com/saezlab/CARNIVAL@master ] [1] "Libraries: " "/home/omnipath/local/R/4.3-3.17" [3] "/home/omnipath/local/R/4.3" "/usr/lib/R/library" trying URL 'https://cran.uni-muenster.de/src/contrib/lpSolve_5.6.20.tar.gz' Content type 'application/x-gzip' length 468218 bytes (457 KB) ================================================== downloaded 457 KB trying URL 'https://cran.uni-muenster.de/src/contrib/pkgbuild_1.4.3.tar.gz' Content type 'application/x-gzip' length 48605 bytes (47 KB) ================================================== downloaded 47 KB trying URL 'https://cran.uni-muenster.de/src/contrib/processx_3.8.3.tar.gz' Content type 'application/x-gzip' length 163682 bytes (159 KB) ================================================== downloaded 159 KB * installing *source* package ‘lpSolve’ ... ** package ‘lpSolve’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ gcc -I"/usr/share/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c colamd.c -o colamd.o gcc -I"/usr/share/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c commonlib.c -o commonlib.o gcc -I"/usr/share/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c hbio.c -o hbio.o gcc -I"/usr/share/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ini.c -o ini.o gcc -I"/usr/share/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o gcc -I"/usr/share/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c isfixedvar.c -o isfixedvar.o gcc -I"/usr/share/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lp_Hash.c -o lp_Hash.o gcc -I"/usr/share/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lp_LUSOL.c -o lp_LUSOL.o gcc -I"/usr/share/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lp_MDO.c -o lp_MDO.o gcc -I"/usr/share/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lp_MPS.c -o lp_MPS.o gcc -I"/usr/share/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lp_SOS.c -o lp_SOS.o gcc -I"/usr/share/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lp_crash.c -o lp_crash.o gcc -I"/usr/share/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lp_lib.c -o lp_lib.o gcc -I"/usr/share/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lp_matrix.c -o lp_matrix.o gcc -I"/usr/share/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lp_mipbb.c -o lp_mipbb.o gcc -I"/usr/share/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lp_params.c -o lp_params.o gcc -I"/usr/share/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lp_presolve.c -o lp_presolve.o gcc -I"/usr/share/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lp_price.c -o lp_price.o gcc -I"/usr/share/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lp_pricePSE.c -o lp_pricePSE.o gcc -I"/usr/share/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lp_report.c -o lp_report.o gcc -I"/usr/share/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lp_rlp.c -o lp_rlp.o gcc -I"/usr/share/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lp_scale.c -o lp_scale.o gcc -I"/usr/share/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lp_simplex.c -o lp_simplex.o gcc -I"/usr/share/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lp_utils.c -o lp_utils.o gcc -I"/usr/share/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lp_wlp.c -o lp_wlp.o gcc -I"/usr/share/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lpslink56.c -o lpslink56.o gcc -I"/usr/share/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lusol.c -o lusol.o gcc -I"/usr/share/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lusolio.c -o lusolio.o gcc -I"/usr/share/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mmio.c -o mmio.o gcc -I"/usr/share/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c myblas.c -o myblas.o gcc -I"/usr/share/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sparselib.c -o sparselib.o gcc -I"/usr/share/R/include" -DNDEBUG -I . -DINTEGERTIME -DPARSER_LP -DBUILDING_FOR_R -DYY_NEVER_INTERACTIVE -DUSRDLL -DCLOCKTIME -DRoleIsExternalInvEngine -DINVERSE_ACTIVE=INVERSE_LUSOL -DINLINE=static -DParanoia -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c yacc_read.c -o yacc_read.o gcc -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -o lpSolve.so colamd.o commonlib.o hbio.o ini.o init.o isfixedvar.o lp_Hash.o lp_LUSOL.o lp_MDO.o lp_MPS.o lp_SOS.o lp_crash.o lp_lib.o lp_matrix.o lp_mipbb.o lp_params.o lp_presolve.o lp_price.o lp_pricePSE.o lp_report.o lp_rlp.o lp_scale.o lp_simplex.o lp_utils.o lp_wlp.o lpslink56.o lusol.o lusolio.o mmio.o myblas.o sparselib.o yacc_read.o -L/usr/lib/R/lib -lR installing to /home/omnipath/local/R/4.3-3.17/00LOCK-lpSolve/00new/lpSolve/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lpSolve) * installing *source* package ‘processx’ ... ** package ‘processx’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ gcc -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wall tools/px.c -o tools/px gcc -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -I../inst/include -Wall tools/sock.c -o tools/sock gcc -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro supervisor/supervisor.c \ supervisor/utils.c -o supervisor/supervisor gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c base64.c -o base64.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c client.c -o client.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c errors.c -o errors.o gcc -shared -L"/usr/lib/R/lib" -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -o client.so base64.o client.o errors.o \ -L"/usr/lib/R/lib" -lR if [ -n "" ]; then \ echo Removing libR.so dependency from client.so; \ patchelf --remove-needed libR.so client.so; \ fi gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c poll.c -o poll.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c processx-connection.c -o processx-connection.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c processx-vector.c -o processx-vector.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c create-time.c -o create-time.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c unix/childlist.c -o unix/childlist.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c unix/connection.c -o unix/connection.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c unix/processx.c -o unix/processx.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c unix/sigchld.c -o unix/sigchld.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c unix/utils.c -o unix/utils.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c unix/named_pipe.c -o unix/named_pipe.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c cleancall.c -o cleancall.o gcc -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -o processx.so init.o poll.o errors.o processx-connection.o processx-vector.o create-time.o base64.o unix/childlist.o unix/connection.o unix/processx.o unix/sigchld.o unix/utils.o unix/named_pipe.o cleancall.o -L/usr/lib/R/lib -lR installing via 'install.libs.R' to /home/omnipath/local/R/4.3-3.17/00LOCK-processx/00new/processx ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (processx) * installing *source* package ‘pkgbuild’ ... ** package ‘pkgbuild’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pkgbuild) The downloaded source packages are in ‘/tmp/RtmpseqMgg/downloaded_packages’ Bioconductor version '3.17' is out-of-date; the current release version '3.18' is available with R version '4.3'; see https://bioconductor.org/install 'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")' for details. Replacement repositories: CRAN: https://cloud.r-project.org Bioconductor version 3.17 (BiocManager 1.30.22), R 4.3.1 (2023-06-16) Old packages: 'cli', 'filelock', 'igraph' trying URL 'https://cloud.r-project.org/src/contrib/cli_3.6.2.tar.gz' Content type 'application/x-gzip' length 569771 bytes (556 KB) ================================================== downloaded 556 KB trying URL 'https://cloud.r-project.org/src/contrib/filelock_1.0.3.tar.gz' Content type 'application/x-gzip' length 15443 bytes (15 KB) ================================================== downloaded 15 KB trying URL 'https://cloud.r-project.org/src/contrib/igraph_1.6.0.tar.gz' Content type 'application/x-gzip' length 3510416 bytes (3.3 MB) ================================================== downloaded 3.3 MB * installing *source* package ‘cli’ ... ** package ‘cli’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ gcc -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -I../inst/include -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ansi.c -o ansi.o gcc -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -I../inst/include -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c cleancall.c -o cleancall.o gcc -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -I../inst/include -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c diff.c -o diff.o gcc -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -I../inst/include -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c errors.c -o errors.o gcc -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -I../inst/include -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c glue.c -o glue.o gcc -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -I../inst/include -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o gcc -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -I../inst/include -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c inst.c -o inst.o gcc -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -I../inst/include -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c keypress-unix.c -o keypress-unix.o gcc -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -I../inst/include -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c keypress-win.c -o keypress-win.o gcc -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -I../inst/include -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c keypress.c -o keypress.o gcc -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -I../inst/include -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c md5.c -o md5.o gcc -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -I../inst/include -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c progress-altrep.c -o progress-altrep.o gcc -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -I../inst/include -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c progress.c -o progress.o gcc -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -I../inst/include -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sha1.c -o sha1.o gcc -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -I../inst/include -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sha256.c -o sha256.o gcc -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -I../inst/include -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c thread.c -o thread.o gcc -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -I../inst/include -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c tty.c -o tty.o gcc -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -I../inst/include -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c utf8.c -o utf8.o gcc -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -I../inst/include -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c utils.c -o utils.o gcc -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -I../inst/include -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vt.c -o vt.o gcc -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -I../inst/include -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vtparse.c -o vtparse.o gcc -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -I../inst/include -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vtparse_table.c -o vtparse_table.o gcc -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -I../inst/include -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c win-utf8.c -o win-utf8.o gcc -I"/usr/share/R/include" -DNDEBUG -fvisibility=hidden -I../inst/include -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c winfiles.c -o winfiles.o gcc -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -o cli.so ansi.o cleancall.o diff.o errors.o glue.o init.o inst.o keypress-unix.o keypress-win.o keypress.o md5.o progress-altrep.o progress.o sha1.o sha256.o thread.o tty.o utf8.o utils.o vt.o vtparse.o vtparse_table.o win-utf8.o winfiles.o -L/usr/lib/R/lib -lR installing to /home/omnipath/local/R/4.3-3.17/00LOCK-cli/00new/cli/libs ** R ** exec ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cli) * installing *source* package ‘filelock’ ... ** package ‘filelock’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ rm -f filelock.so init.o filelock-unix.o locklist.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c filelock-unix.c -o filelock-unix.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c locklist.c -o locklist.o gcc -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -o filelock.so init.o filelock-unix.o locklist.o -L/usr/lib/R/lib -lR installing to /home/omnipath/local/R/4.3-3.17/00LOCK-filelock/00new/filelock/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (filelock) * installing *source* package ‘igraph’ ... ** package ‘igraph’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether the compiler supports GNU C++... yes checking whether g++ -std=gnu++11 accepts -g... yes checking for g++ -std=gnu++11 option to enable C++11 features... none needed checking whether the compiler supports GNU Fortran... yes checking whether gfortran accepts -g... yes checking for expm1... yes checking for fmin... yes checking for finite... yes checking for log2... yes checking for log1p... yes checking for rint... yes checking for rintf... yes checking for round... yes checking for stpcpy... yes checking for strcasecmp... yes checking for _stricmp... no checking for strdup... yes checking for isfinite... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/times.h... yes checking for net/if.h... yes checking for netinet/in.h... yes checking for net/if_dl.h... no checking for sys/sockio.h... no checking for sys/un.h... yes checking for sys/socket.h... yes checking for sys/ioctl.h... yes checking for sys/time.h... yes checking for sys/file.h... yes checking for struct sockaddr.sa_len... no checking for xml2-config... /usr/bin/xml2-config checking for xmlSAXUserParseFile in -lxml2... yes checking for libxml/parser.h... yes checking for __gmpz_add in -lgmp... yes checking for gmp.h... yes checking how to run the C++ preprocessor... g++ -std=gnu++11 -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for glp_read_mps in -lglpk... yes checking for glpk.h... yes configure: creating ./config.status config.status: creating src/Makevars.tmp config.status: creating src/Makevars config.status: creating src/config.h *** Compiler settings used: CC=gcc LD= CFLAGS=-g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 CPPFLAGS= CXX=g++ -std=gnu++11 CXXFLAGS=-g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 LDFLAGS=-Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro LIBS= ** libs using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/centrality/betweenness.c -o core/centrality/betweenness.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/centrality/centrality_other.c -o core/centrality/centrality_other.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/centrality/centralization.c -o core/centrality/centralization.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/centrality/closeness.c -o core/centrality/closeness.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/centrality/coreness.c -o core/centrality/coreness.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/centrality/prpack.cpp -o core/centrality/prpack.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/centrality/prpack/prpack_base_graph.cpp -o core/centrality/prpack/prpack_base_graph.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/centrality/prpack/prpack_igraph_graph.cpp -o core/centrality/prpack/prpack_igraph_graph.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/centrality/prpack/prpack_preprocessed_ge_graph.cpp -o core/centrality/prpack/prpack_preprocessed_ge_graph.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/centrality/prpack/prpack_preprocessed_gs_graph.cpp -o core/centrality/prpack/prpack_preprocessed_gs_graph.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/centrality/prpack/prpack_preprocessed_scc_graph.cpp -o core/centrality/prpack/prpack_preprocessed_scc_graph.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/centrality/prpack/prpack_preprocessed_schur_graph.cpp -o core/centrality/prpack/prpack_preprocessed_schur_graph.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/centrality/prpack/prpack_result.cpp -o core/centrality/prpack/prpack_result.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/centrality/prpack/prpack_solver.cpp -o core/centrality/prpack/prpack_solver.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/centrality/prpack/prpack_utils.cpp -o core/centrality/prpack/prpack_utils.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/cliques/cliquer/cliquer.c -o core/cliques/cliquer/cliquer.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/cliques/cliquer/cliquer_graph.c -o core/cliques/cliquer/cliquer_graph.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/cliques/cliquer/reorder.c -o core/cliques/cliquer/reorder.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/cliques/cliquer_wrapper.c -o core/cliques/cliquer_wrapper.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/cliques/cliques.c -o core/cliques/cliques.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/cliques/glet.c -o core/cliques/glet.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/cliques/maximal_cliques.c -o core/cliques/maximal_cliques.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/community/community_misc.c -o core/community/community_misc.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/community/edge_betweenness.c -o core/community/edge_betweenness.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/community/fast_modularity.c -o core/community/fast_modularity.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/community/fluid.c -o core/community/fluid.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/community/infomap/infomap.cc -o core/community/infomap/infomap.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/community/infomap/infomap_FlowGraph.cc -o core/community/infomap/infomap_FlowGraph.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/community/infomap/infomap_Greedy.cc -o core/community/infomap/infomap_Greedy.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/community/infomap/infomap_Node.cc -o core/community/infomap/infomap_Node.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/community/label_propagation.c -o core/community/label_propagation.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/community/leading_eigenvector.c -o core/community/leading_eigenvector.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/community/leiden.c -o core/community/leiden.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/community/louvain.c -o core/community/louvain.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/community/modularity.c -o core/community/modularity.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/community/optimal_modularity.c -o core/community/optimal_modularity.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/community/spinglass/NetDataTypes.cpp -o core/community/spinglass/NetDataTypes.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/community/spinglass/NetRoutines.cpp -o core/community/spinglass/NetRoutines.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/community/spinglass/clustertool.cpp -o core/community/spinglass/clustertool.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/community/spinglass/pottsmodel_2.cpp -o core/community/spinglass/pottsmodel_2.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/community/walktrap/walktrap.cpp -o core/community/walktrap/walktrap.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/community/walktrap/walktrap_communities.cpp -o core/community/walktrap/walktrap_communities.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/community/walktrap/walktrap_graph.cpp -o core/community/walktrap/walktrap_graph.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/community/walktrap/walktrap_heap.cpp -o core/community/walktrap/walktrap_heap.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/connectivity/cohesive_blocks.c -o core/connectivity/cohesive_blocks.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/connectivity/components.c -o core/connectivity/components.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/connectivity/separators.c -o core/connectivity/separators.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/constructors/adjacency.c -o core/constructors/adjacency.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/constructors/atlas.c -o core/constructors/atlas.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/constructors/basic_constructors.c -o core/constructors/basic_constructors.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/constructors/de_bruijn.c -o core/constructors/de_bruijn.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/constructors/famous.c -o core/constructors/famous.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/constructors/full.c -o core/constructors/full.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/constructors/kautz.c -o core/constructors/kautz.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/constructors/lcf.c -o core/constructors/lcf.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/constructors/linegraph.c -o core/constructors/linegraph.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/constructors/prufer.c -o core/constructors/prufer.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/constructors/regular.c -o core/constructors/regular.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/core/array.c -o core/core/array.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/core/buckets.c -o core/core/buckets.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/core/cutheap.c -o core/core/cutheap.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/core/dqueue.c -o core/core/dqueue.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/core/error.c -o core/core/error.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/core/estack.c -o core/core/estack.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/core/fixed_vectorlist.c -o core/core/fixed_vectorlist.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/core/grid.c -o core/core/grid.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/core/heap.c -o core/core/heap.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/core/indheap.c -o core/core/indheap.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/core/interruption.c -o core/core/interruption.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/core/marked_queue.c -o core/core/marked_queue.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/core/matrix.c -o core/core/matrix.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/core/memory.c -o core/core/memory.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/core/printing.c -o core/core/printing.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/core/progress.c -o core/core/progress.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/core/psumtree.c -o core/core/psumtree.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/core/set.c -o core/core/set.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/core/sparsemat.c -o core/core/sparsemat.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/core/spmatrix.c -o core/core/spmatrix.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/core/stack.c -o core/core/stack.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/core/statusbar.c -o core/core/statusbar.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/core/strvector.c -o core/core/strvector.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/core/trie.c -o core/core/trie.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/core/vector.c -o core/core/vector.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/core/vector_ptr.c -o core/core/vector_ptr.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/flow/flow.c -o core/flow/flow.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/flow/st-cuts.c -o core/flow/st-cuts.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/games/barabasi.c -o core/games/barabasi.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/games/callaway_traits.c -o core/games/callaway_traits.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/games/citations.c -o core/games/citations.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/games/correlated.c -o core/games/correlated.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/games/degree_sequence.c -o core/games/degree_sequence.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/games/degree_sequence_vl/gengraph_box_list.cpp -o core/games/degree_sequence_vl/gengraph_box_list.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/games/degree_sequence_vl/gengraph_degree_sequence.cpp -o core/games/degree_sequence_vl/gengraph_degree_sequence.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/games/degree_sequence_vl/gengraph_graph_molloy_hash.cpp -o core/games/degree_sequence_vl/gengraph_graph_molloy_hash.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/games/degree_sequence_vl/gengraph_graph_molloy_optimized.cpp -o core/games/degree_sequence_vl/gengraph_graph_molloy_optimized.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/games/degree_sequence_vl/gengraph_mr-connected.cpp -o core/games/degree_sequence_vl/gengraph_mr-connected.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/games/degree_sequence_vl/gengraph_powerlaw.cpp -o core/games/degree_sequence_vl/gengraph_powerlaw.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/games/degree_sequence_vl/gengraph_random.cpp -o core/games/degree_sequence_vl/gengraph_random.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/games/dotproduct.c -o core/games/dotproduct.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/games/erdos_renyi.c -o core/games/erdos_renyi.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/games/establishment.c -o core/games/establishment.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/games/forestfire.c -o core/games/forestfire.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/games/grg.c -o core/games/grg.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/games/growing_random.c -o core/games/growing_random.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/games/islands.c -o core/games/islands.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/games/k_regular.c -o core/games/k_regular.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/games/preference.c -o core/games/preference.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/games/recent_degree.c -o core/games/recent_degree.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/games/sbm.c -o core/games/sbm.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/games/static_fitness.c -o core/games/static_fitness.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/games/tree.c -o core/games/tree.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/games/watts_strogatz.c -o core/games/watts_strogatz.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/graph/adjlist.c -o core/graph/adjlist.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/graph/attributes.c -o core/graph/attributes.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/graph/basic_query.c -o core/graph/basic_query.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/graph/cattributes.c -o core/graph/cattributes.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/graph/iterators.c -o core/graph/iterators.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/graph/type_indexededgelist.c -o core/graph/type_indexededgelist.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/graph/visitors.c -o core/graph/visitors.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/hrg/hrg.cc -o core/hrg/hrg.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/hrg/hrg_types.cc -o core/hrg/hrg_types.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/internal/glpk_support.c -o core/internal/glpk_support.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/internal/hacks.c -o core/internal/hacks.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/internal/lsap.c -o core/internal/lsap.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/internal/qsort.c -o core/internal/qsort.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/internal/qsort_r.c -o core/internal/qsort_r.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/internal/zeroin.c -o core/internal/zeroin.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/io/dimacs.c -o core/io/dimacs.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/io/dl-lexer.c -o core/io/dl-lexer.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/io/dl-parser.c -o core/io/dl-parser.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/io/dl.c -o core/io/dl.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/io/dot.c -o core/io/dot.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/io/edgelist.c -o core/io/edgelist.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/io/gml-lexer.c -o core/io/gml-lexer.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/io/gml-parser.c -o core/io/gml-parser.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/io/gml-tree.c -o core/io/gml-tree.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/io/gml.c -o core/io/gml.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/io/graphdb.c -o core/io/graphdb.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/io/graphml.c -o core/io/graphml.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/io/leda.c -o core/io/leda.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/io/lgl-lexer.c -o core/io/lgl-lexer.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/io/lgl-parser.c -o core/io/lgl-parser.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/io/lgl.c -o core/io/lgl.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/io/ncol-lexer.c -o core/io/ncol-lexer.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/io/ncol-parser.c -o core/io/ncol-parser.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/io/ncol.c -o core/io/ncol.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/io/pajek-lexer.c -o core/io/pajek-lexer.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/io/pajek-parser.c -o core/io/pajek-parser.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/io/pajek.c -o core/io/pajek.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/isomorphism/bliss.cc -o core/isomorphism/bliss.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/isomorphism/bliss/defs.cc -o core/isomorphism/bliss/defs.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/isomorphism/bliss/graph.cc -o core/isomorphism/bliss/graph.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/isomorphism/bliss/heap.cc -o core/isomorphism/bliss/heap.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/isomorphism/bliss/orbit.cc -o core/isomorphism/bliss/orbit.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/isomorphism/bliss/partition.cc -o core/isomorphism/bliss/partition.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/isomorphism/bliss/uintseqhash.cc -o core/isomorphism/bliss/uintseqhash.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/isomorphism/bliss/utils.cc -o core/isomorphism/bliss/utils.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/isomorphism/isoclasses.c -o core/isomorphism/isoclasses.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/isomorphism/isomorphism_misc.c -o core/isomorphism/isomorphism_misc.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/isomorphism/lad.c -o core/isomorphism/lad.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/isomorphism/queries.c -o core/isomorphism/queries.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/isomorphism/vf2.c -o core/isomorphism/vf2.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/layout/circular.c -o core/layout/circular.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/layout/davidson_harel.c -o core/layout/davidson_harel.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/layout/drl/DensityGrid.cpp -o core/layout/drl/DensityGrid.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/layout/drl/DensityGrid_3d.cpp -o core/layout/drl/DensityGrid_3d.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/layout/drl/drl_graph.cpp -o core/layout/drl/drl_graph.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/layout/drl/drl_graph_3d.cpp -o core/layout/drl/drl_graph_3d.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/layout/drl/drl_layout.cpp -o core/layout/drl/drl_layout.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/layout/drl/drl_layout_3d.cpp -o core/layout/drl/drl_layout_3d.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/layout/drl/drl_parse.cpp -o core/layout/drl/drl_parse.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/layout/fruchterman_reingold.c -o core/layout/fruchterman_reingold.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/layout/gem.c -o core/layout/gem.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/layout/graphopt.c -o core/layout/graphopt.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/layout/kamada_kawai.c -o core/layout/kamada_kawai.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/layout/large_graph.c -o core/layout/large_graph.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/layout/layout_bipartite.c -o core/layout/layout_bipartite.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/layout/layout_grid.c -o core/layout/layout_grid.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/layout/layout_random.c -o core/layout/layout_random.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/layout/mds.c -o core/layout/mds.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/layout/merge_dla.c -o core/layout/merge_dla.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/layout/merge_grid.c -o core/layout/merge_grid.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/layout/reingold_tilford.c -o core/layout/reingold_tilford.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/layout/sugiyama.c -o core/layout/sugiyama.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/linalg/arpack.c -o core/linalg/arpack.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/linalg/blas.c -o core/linalg/blas.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/linalg/eigen.c -o core/linalg/eigen.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/linalg/lapack.c -o core/linalg/lapack.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/math/bfgs.c -o core/math/bfgs.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/math/complex.c -o core/math/complex.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/math/utils.c -o core/math/utils.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/misc/bipartite.c -o core/misc/bipartite.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/misc/chordality.c -o core/misc/chordality.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/misc/cocitation.c -o core/misc/cocitation.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/misc/coloring.c -o core/misc/coloring.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/misc/conversion.c -o core/misc/conversion.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/misc/degree_sequence.cpp -o core/misc/degree_sequence.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/misc/embedding.c -o core/misc/embedding.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/misc/feedback_arc_set.c -o core/misc/feedback_arc_set.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/misc/graphicality.c -o core/misc/graphicality.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/misc/matching.c -o core/misc/matching.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/misc/microscopic_update.c -o core/misc/microscopic_update.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/misc/mixing.c -o core/misc/mixing.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/misc/motifs.c -o core/misc/motifs.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/misc/other.c -o core/misc/other.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/misc/scan.c -o core/misc/scan.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/misc/sir.c -o core/misc/sir.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/misc/spanning_trees.c -o core/misc/spanning_trees.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/operators/add_edge.c -o core/operators/add_edge.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/operators/complementer.c -o core/operators/complementer.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/operators/compose.c -o core/operators/compose.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/operators/connect_neighborhood.c -o core/operators/connect_neighborhood.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/operators/contract.c -o core/operators/contract.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/operators/difference.c -o core/operators/difference.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/operators/disjoint_union.c -o core/operators/disjoint_union.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/operators/intersection.c -o core/operators/intersection.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/operators/misc_internal.c -o core/operators/misc_internal.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/operators/permute.c -o core/operators/permute.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/operators/reverse.c -o core/operators/reverse.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/operators/rewire.c -o core/operators/rewire.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/operators/rewire_edges.c -o core/operators/rewire_edges.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/operators/simplify.c -o core/operators/simplify.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/operators/subgraph.c -o core/operators/subgraph.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/operators/union.c -o core/operators/union.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/paths/all_shortest_paths.c -o core/paths/all_shortest_paths.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/paths/bellman_ford.c -o core/paths/bellman_ford.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/paths/dijkstra.c -o core/paths/dijkstra.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/paths/distances.c -o core/paths/distances.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/paths/eulerian.c -o core/paths/eulerian.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/paths/histogram.c -o core/paths/histogram.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/paths/johnson.c -o core/paths/johnson.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/paths/random_walk.c -o core/paths/random_walk.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/paths/shortest_paths.c -o core/paths/shortest_paths.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/paths/simple_paths.c -o core/paths/simple_paths.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/paths/unweighted.c -o core/paths/unweighted.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/properties/basic_properties.c -o core/properties/basic_properties.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/properties/constraint.c -o core/properties/constraint.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/properties/convergence_degree.c -o core/properties/convergence_degree.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/properties/dag.c -o core/properties/dag.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/properties/degrees.c -o core/properties/degrees.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/properties/girth.c -o core/properties/girth.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/properties/loops.c -o core/properties/loops.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/properties/multiplicity.c -o core/properties/multiplicity.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/properties/neighborhood.c -o core/properties/neighborhood.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/properties/spectral.c -o core/properties/spectral.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/properties/trees.c -o core/properties/trees.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/properties/triangles.c -o core/properties/triangles.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/random/random.c -o core/random/random.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/scg/scg.c -o core/scg/scg.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/scg/scg_approximate_methods.c -o core/scg/scg_approximate_methods.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/scg/scg_exact_scg.c -o core/scg/scg_exact_scg.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/scg/scg_kmeans.c -o core/scg/scg_kmeans.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/scg/scg_optimal_method.c -o core/scg/scg_optimal_method.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/scg/scg_utils.c -o core/scg/scg_utils.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c core/version.c -o core/version.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_add.c -o vendor/cs/cs_add.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_amd.c -o vendor/cs/cs_amd.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_chol.c -o vendor/cs/cs_chol.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_cholsol.c -o vendor/cs/cs_cholsol.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_compress.c -o vendor/cs/cs_compress.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_counts.c -o vendor/cs/cs_counts.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_cumsum.c -o vendor/cs/cs_cumsum.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_dfs.c -o vendor/cs/cs_dfs.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_dmperm.c -o vendor/cs/cs_dmperm.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_droptol.c -o vendor/cs/cs_droptol.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_dropzeros.c -o vendor/cs/cs_dropzeros.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_dupl.c -o vendor/cs/cs_dupl.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_entry.c -o vendor/cs/cs_entry.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_ereach.c -o vendor/cs/cs_ereach.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_etree.c -o vendor/cs/cs_etree.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_fkeep.c -o vendor/cs/cs_fkeep.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_gaxpy.c -o vendor/cs/cs_gaxpy.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_happly.c -o vendor/cs/cs_happly.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_house.c -o vendor/cs/cs_house.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_ipvec.c -o vendor/cs/cs_ipvec.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_leaf.c -o vendor/cs/cs_leaf.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_load.c -o vendor/cs/cs_load.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_lsolve.c -o vendor/cs/cs_lsolve.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_ltsolve.c -o vendor/cs/cs_ltsolve.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_lu.c -o vendor/cs/cs_lu.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_lusol.c -o vendor/cs/cs_lusol.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_malloc.c -o vendor/cs/cs_malloc.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_maxtrans.c -o vendor/cs/cs_maxtrans.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_multiply.c -o vendor/cs/cs_multiply.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_norm.c -o vendor/cs/cs_norm.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_permute.c -o vendor/cs/cs_permute.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_pinv.c -o vendor/cs/cs_pinv.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_post.c -o vendor/cs/cs_post.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_print.c -o vendor/cs/cs_print.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_pvec.c -o vendor/cs/cs_pvec.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_qr.c -o vendor/cs/cs_qr.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_qrsol.c -o vendor/cs/cs_qrsol.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_randperm.c -o vendor/cs/cs_randperm.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_reach.c -o vendor/cs/cs_reach.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_scatter.c -o vendor/cs/cs_scatter.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_scc.c -o vendor/cs/cs_scc.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_schol.c -o vendor/cs/cs_schol.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_spsolve.c -o vendor/cs/cs_spsolve.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_sqr.c -o vendor/cs/cs_sqr.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_symperm.c -o vendor/cs/cs_symperm.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_tdfs.c -o vendor/cs/cs_tdfs.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_transpose.c -o vendor/cs/cs_transpose.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_updown.c -o vendor/cs/cs_updown.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_usolve.c -o vendor/cs/cs_usolve.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_util.c -o vendor/cs/cs_util.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/cs/cs_utsolve.c -o vendor/cs/cs_utsolve.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/mini-gmp/mini-gmp.c -o vendor/mini-gmp/mini-gmp.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/plfit/gss.c -o vendor/plfit/gss.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/plfit/hzeta.c -o vendor/plfit/hzeta.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/plfit/kolmogorov.c -o vendor/plfit/kolmogorov.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/plfit/lbfgs.c -o vendor/plfit/lbfgs.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/plfit/mt.c -o vendor/plfit/mt.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/plfit/options.c -o vendor/plfit/options.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/plfit/platform.c -o vendor/plfit/platform.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/plfit/plfit.c -o vendor/plfit/plfit.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/plfit/plfit_error.c -o vendor/plfit/plfit_error.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/plfit/rbinom.c -o vendor/plfit/rbinom.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/plfit/sampling.c -o vendor/plfit/sampling.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -c vendor/arpack/dgetv0.f -o vendor/arpack/dgetv0.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -c vendor/arpack/dlaqrb.f -o vendor/arpack/dlaqrb.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -c vendor/arpack/dmout.f -o vendor/arpack/dmout.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -c vendor/arpack/dnaitr.f -o vendor/arpack/dnaitr.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -c vendor/arpack/dnapps.f -o vendor/arpack/dnapps.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -c vendor/arpack/dnaup2.f -o vendor/arpack/dnaup2.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -c vendor/arpack/dnaupd.f -o vendor/arpack/dnaupd.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -c vendor/arpack/dnconv.f -o vendor/arpack/dnconv.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -c vendor/arpack/dneigh.f -o vendor/arpack/dneigh.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -c vendor/arpack/dneupd.f -o vendor/arpack/dneupd.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -c vendor/arpack/dngets.f -o vendor/arpack/dngets.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -c vendor/arpack/dsaitr.f -o vendor/arpack/dsaitr.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -c vendor/arpack/dsapps.f -o vendor/arpack/dsapps.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -c vendor/arpack/dsaup2.f -o vendor/arpack/dsaup2.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -c vendor/arpack/dsaupd.f -o vendor/arpack/dsaupd.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -c vendor/arpack/dsconv.f -o vendor/arpack/dsconv.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -c vendor/arpack/dseigt.f -o vendor/arpack/dseigt.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -c vendor/arpack/dsesrt.f -o vendor/arpack/dsesrt.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -c vendor/arpack/dseupd.f -o vendor/arpack/dseupd.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -c vendor/arpack/dsgets.f -o vendor/arpack/dsgets.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -c vendor/arpack/dsortc.f -o vendor/arpack/dsortc.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -c vendor/arpack/dsortr.f -o vendor/arpack/dsortr.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -c vendor/arpack/dstatn.f -o vendor/arpack/dstatn.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -c vendor/arpack/dstats.f -o vendor/arpack/dstats.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -c vendor/arpack/dstqrb.f -o vendor/arpack/dstqrb.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -c vendor/arpack/dvout.f -o vendor/arpack/dvout.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -c vendor/arpack/ivout.f -o vendor/arpack/ivout.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -c vendor/arpack/second.f -o vendor/arpack/second.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -c vendor/arpack/wrap.f -o vendor/arpack/wrap.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/simpleraytracer/Color.cpp -o vendor/simpleraytracer/Color.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/simpleraytracer/Light.cpp -o vendor/simpleraytracer/Light.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/simpleraytracer/Point.cpp -o vendor/simpleraytracer/Point.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/simpleraytracer/RIgraphRay.cpp -o vendor/simpleraytracer/RIgraphRay.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/simpleraytracer/Ray.cpp -o vendor/simpleraytracer/Ray.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/simpleraytracer/RayTracer.cpp -o vendor/simpleraytracer/RayTracer.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/simpleraytracer/RayVector.cpp -o vendor/simpleraytracer/RayVector.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/simpleraytracer/Shape.cpp -o vendor/simpleraytracer/Shape.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/simpleraytracer/Sphere.cpp -o vendor/simpleraytracer/Sphere.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/simpleraytracer/Triangle.cpp -o vendor/simpleraytracer/Triangle.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/simpleraytracer/unit_limiter.cpp -o vendor/simpleraytracer/unit_limiter.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/uuid/R.c -o vendor/uuid/R.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/uuid/clear.c -o vendor/uuid/clear.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/uuid/compare.c -o vendor/uuid/compare.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/uuid/copy.c -o vendor/uuid/copy.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/uuid/gen_uuid.c -o vendor/uuid/gen_uuid.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/uuid/isnull.c -o vendor/uuid/isnull.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/uuid/pack.c -o vendor/uuid/pack.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/uuid/parse.c -o vendor/uuid/parse.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/uuid/unpack.c -o vendor/uuid/unpack.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vendor/uuid/unparse.c -o vendor/uuid/unparse.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rinterface.c -o rinterface.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rinterface_extra.c -o rinterface_extra.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rrandom.c -o rrandom.o gcc -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c lazyeval.c -o lazyeval.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.cpp -o init.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c cpp11.cpp -o cpp11.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/ -D_GNU_SOURCE=1 -I'/home/omnipath/local/R/4.3-3.17/cpp11/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c cpprinterface.cpp -o cpprinterface.o g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -o igraph.so core/centrality/betweenness.o core/centrality/centrality_other.o core/centrality/centralization.o core/centrality/closeness.o core/centrality/coreness.o core/centrality/prpack.o core/centrality/prpack/prpack_base_graph.o core/centrality/prpack/prpack_igraph_graph.o core/centrality/prpack/prpack_preprocessed_ge_graph.o core/centrality/prpack/prpack_preprocessed_gs_graph.o core/centrality/prpack/prpack_preprocessed_scc_graph.o core/centrality/prpack/prpack_preprocessed_schur_graph.o core/centrality/prpack/prpack_result.o core/centrality/prpack/prpack_solver.o core/centrality/prpack/prpack_utils.o core/cliques/cliquer/cliquer.o core/cliques/cliquer/cliquer_graph.o core/cliques/cliquer/reorder.o core/cliques/cliquer_wrapper.o core/cliques/cliques.o core/cliques/glet.o core/cliques/maximal_cliques.o core/community/community_misc.o core/community/edge_betweenness.o core/community/fast_modularity.o core/community/fluid.o core/community/infomap/infomap.o core/community/infomap/infomap_FlowGraph.o core/community/infomap/infomap_Greedy.o core/community/infomap/infomap_Node.o core/community/label_propagation.o core/community/leading_eigenvector.o core/community/leiden.o core/community/louvain.o core/community/modularity.o core/community/optimal_modularity.o core/community/spinglass/NetDataTypes.o core/community/spinglass/NetRoutines.o core/community/spinglass/clustertool.o core/community/spinglass/pottsmodel_2.o core/community/walktrap/walktrap.o core/community/walktrap/walktrap_communities.o core/community/walktrap/walktrap_graph.o core/community/walktrap/walktrap_heap.o core/connectivity/cohesive_blocks.o core/connectivity/components.o core/connectivity/separators.o core/constructors/adjacency.o core/constructors/atlas.o core/constructors/basic_constructors.o core/constructors/de_bruijn.o core/constructors/famous.o core/constructors/full.o core/constructors/kautz.o core/constructors/lcf.o core/constructors/linegraph.o core/constructors/prufer.o core/constructors/regular.o core/core/array.o core/core/buckets.o core/core/cutheap.o core/core/dqueue.o core/core/error.o core/core/estack.o core/core/fixed_vectorlist.o core/core/grid.o core/core/heap.o core/core/indheap.o core/core/interruption.o core/core/marked_queue.o core/core/matrix.o core/core/memory.o core/core/printing.o core/core/progress.o core/core/psumtree.o core/core/set.o core/core/sparsemat.o core/core/spmatrix.o core/core/stack.o core/core/statusbar.o core/core/strvector.o core/core/trie.o core/core/vector.o core/core/vector_ptr.o core/flow/flow.o core/flow/st-cuts.o core/games/barabasi.o core/games/callaway_traits.o core/games/citations.o core/games/correlated.o core/games/degree_sequence.o core/games/degree_sequence_vl/gengraph_box_list.o core/games/degree_sequence_vl/gengraph_degree_sequence.o core/games/degree_sequence_vl/gengraph_graph_molloy_hash.o core/games/degree_sequence_vl/gengraph_graph_molloy_optimized.o core/games/degree_sequence_vl/gengraph_mr-connected.o core/games/degree_sequence_vl/gengraph_powerlaw.o core/games/degree_sequence_vl/gengraph_random.o core/games/dotproduct.o core/games/erdos_renyi.o core/games/establishment.o core/games/forestfire.o core/games/grg.o core/games/growing_random.o core/games/islands.o core/games/k_regular.o core/games/preference.o core/games/recent_degree.o core/games/sbm.o core/games/static_fitness.o core/games/tree.o core/games/watts_strogatz.o core/graph/adjlist.o core/graph/attributes.o core/graph/basic_query.o core/graph/cattributes.o core/graph/iterators.o core/graph/type_indexededgelist.o core/graph/visitors.o core/hrg/hrg.o core/hrg/hrg_types.o core/internal/glpk_support.o core/internal/hacks.o core/internal/lsap.o core/internal/qsort.o core/internal/qsort_r.o core/internal/zeroin.o core/io/dimacs.o core/io/dl-lexer.o core/io/dl-parser.o core/io/dl.o core/io/dot.o core/io/edgelist.o core/io/gml-lexer.o core/io/gml-parser.o core/io/gml-tree.o core/io/gml.o core/io/graphdb.o core/io/graphml.o core/io/leda.o core/io/lgl-lexer.o core/io/lgl-parser.o core/io/lgl.o core/io/ncol-lexer.o core/io/ncol-parser.o core/io/ncol.o core/io/pajek-lexer.o core/io/pajek-parser.o core/io/pajek.o core/isomorphism/bliss.o core/isomorphism/bliss/defs.o core/isomorphism/bliss/graph.o core/isomorphism/bliss/heap.o core/isomorphism/bliss/orbit.o core/isomorphism/bliss/partition.o core/isomorphism/bliss/uintseqhash.o core/isomorphism/bliss/utils.o core/isomorphism/isoclasses.o core/isomorphism/isomorphism_misc.o core/isomorphism/lad.o core/isomorphism/queries.o core/isomorphism/vf2.o core/layout/circular.o core/layout/davidson_harel.o core/layout/drl/DensityGrid.o core/layout/drl/DensityGrid_3d.o core/layout/drl/drl_graph.o core/layout/drl/drl_graph_3d.o core/layout/drl/drl_layout.o core/layout/drl/drl_layout_3d.o core/layout/drl/drl_parse.o core/layout/fruchterman_reingold.o core/layout/gem.o core/layout/graphopt.o core/layout/kamada_kawai.o core/layout/large_graph.o core/layout/layout_bipartite.o core/layout/layout_grid.o core/layout/layout_random.o core/layout/mds.o core/layout/merge_dla.o core/layout/merge_grid.o core/layout/reingold_tilford.o core/layout/sugiyama.o core/linalg/arpack.o core/linalg/blas.o core/linalg/eigen.o core/linalg/lapack.o core/math/bfgs.o core/math/complex.o core/math/utils.o core/misc/bipartite.o core/misc/chordality.o core/misc/cocitation.o core/misc/coloring.o core/misc/conversion.o core/misc/degree_sequence.o core/misc/embedding.o core/misc/feedback_arc_set.o core/misc/graphicality.o core/misc/matching.o core/misc/microscopic_update.o core/misc/mixing.o core/misc/motifs.o core/misc/other.o core/misc/scan.o core/misc/sir.o core/misc/spanning_trees.o core/operators/add_edge.o core/operators/complementer.o core/operators/compose.o core/operators/connect_neighborhood.o core/operators/contract.o core/operators/difference.o core/operators/disjoint_union.o core/operators/intersection.o core/operators/misc_internal.o core/operators/permute.o core/operators/reverse.o core/operators/rewire.o core/operators/rewire_edges.o core/operators/simplify.o core/operators/subgraph.o core/operators/union.o core/paths/all_shortest_paths.o core/paths/bellman_ford.o core/paths/dijkstra.o core/paths/distances.o core/paths/eulerian.o core/paths/histogram.o core/paths/johnson.o core/paths/random_walk.o core/paths/shortest_paths.o core/paths/simple_paths.o core/paths/unweighted.o core/properties/basic_properties.o core/properties/constraint.o core/properties/convergence_degree.o core/properties/dag.o core/properties/degrees.o core/properties/girth.o core/properties/loops.o core/properties/multiplicity.o core/properties/neighborhood.o core/properties/spectral.o core/properties/trees.o core/properties/triangles.o core/random/random.o core/scg/scg.o core/scg/scg_approximate_methods.o core/scg/scg_exact_scg.o core/scg/scg_kmeans.o core/scg/scg_optimal_method.o core/scg/scg_utils.o core/version.o vendor/cs/cs_add.o vendor/cs/cs_amd.o vendor/cs/cs_chol.o vendor/cs/cs_cholsol.o vendor/cs/cs_compress.o vendor/cs/cs_counts.o vendor/cs/cs_cumsum.o vendor/cs/cs_dfs.o vendor/cs/cs_dmperm.o vendor/cs/cs_droptol.o vendor/cs/cs_dropzeros.o vendor/cs/cs_dupl.o vendor/cs/cs_entry.o vendor/cs/cs_ereach.o vendor/cs/cs_etree.o vendor/cs/cs_fkeep.o vendor/cs/cs_gaxpy.o vendor/cs/cs_happly.o vendor/cs/cs_house.o vendor/cs/cs_ipvec.o vendor/cs/cs_leaf.o vendor/cs/cs_load.o vendor/cs/cs_lsolve.o vendor/cs/cs_ltsolve.o vendor/cs/cs_lu.o vendor/cs/cs_lusol.o vendor/cs/cs_malloc.o vendor/cs/cs_maxtrans.o vendor/cs/cs_multiply.o vendor/cs/cs_norm.o vendor/cs/cs_permute.o vendor/cs/cs_pinv.o vendor/cs/cs_post.o vendor/cs/cs_print.o vendor/cs/cs_pvec.o vendor/cs/cs_qr.o vendor/cs/cs_qrsol.o vendor/cs/cs_randperm.o vendor/cs/cs_reach.o vendor/cs/cs_scatter.o vendor/cs/cs_scc.o vendor/cs/cs_schol.o vendor/cs/cs_spsolve.o vendor/cs/cs_sqr.o vendor/cs/cs_symperm.o vendor/cs/cs_tdfs.o vendor/cs/cs_transpose.o vendor/cs/cs_updown.o vendor/cs/cs_usolve.o vendor/cs/cs_util.o vendor/cs/cs_utsolve.o vendor/mini-gmp/mini-gmp.o vendor/plfit/gss.o vendor/plfit/hzeta.o vendor/plfit/kolmogorov.o vendor/plfit/lbfgs.o vendor/plfit/mt.o vendor/plfit/options.o vendor/plfit/platform.o vendor/plfit/plfit.o vendor/plfit/plfit_error.o vendor/plfit/rbinom.o vendor/plfit/sampling.o vendor/arpack/dgetv0.o vendor/arpack/dlaqrb.o vendor/arpack/dmout.o vendor/arpack/dnaitr.o vendor/arpack/dnapps.o vendor/arpack/dnaup2.o vendor/arpack/dnaupd.o vendor/arpack/dnconv.o vendor/arpack/dneigh.o vendor/arpack/dneupd.o vendor/arpack/dngets.o vendor/arpack/dsaitr.o vendor/arpack/dsapps.o vendor/arpack/dsaup2.o vendor/arpack/dsaupd.o vendor/arpack/dsconv.o vendor/arpack/dseigt.o vendor/arpack/dsesrt.o vendor/arpack/dseupd.o vendor/arpack/dsgets.o vendor/arpack/dsortc.o vendor/arpack/dsortr.o vendor/arpack/dstatn.o vendor/arpack/dstats.o vendor/arpack/dstqrb.o vendor/arpack/dvout.o vendor/arpack/ivout.o vendor/arpack/second.o vendor/arpack/wrap.o vendor/simpleraytracer/Color.o vendor/simpleraytracer/Light.o vendor/simpleraytracer/Point.o vendor/simpleraytracer/RIgraphRay.o vendor/simpleraytracer/Ray.o vendor/simpleraytracer/RayTracer.o vendor/simpleraytracer/RayVector.o vendor/simpleraytracer/Shape.o vendor/simpleraytracer/Sphere.o vendor/simpleraytracer/Triangle.o vendor/simpleraytracer/unit_limiter.o vendor/uuid/R.o vendor/uuid/clear.o vendor/uuid/compare.o vendor/uuid/copy.o vendor/uuid/gen_uuid.o vendor/uuid/isnull.o vendor/uuid/pack.o vendor/uuid/parse.o vendor/uuid/unpack.o vendor/uuid/unparse.o rinterface.o rinterface_extra.o rrandom.o lazyeval.o init.o cpp11.o cpprinterface.o -lxml2 -lgmp -lglpk -llapack -lblas -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR installing to /home/omnipath/local/R/4.3-3.17/00LOCK-igraph/00new/igraph/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (igraph) The downloaded source packages are in ‘/tmp/RtmpseqMgg/downloaded_packages’ 'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")' for details. Replacement repositories: CRAN: https://cloud.r-project.org Bioconductor version 3.17 (BiocManager 1.30.22), R 4.3.1 (2023-06-16) Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TRUE` to re-install: 'BiocCheck' Skipping 2 packages ahead of CRAN: cli, igraph [ Finished: 2023-12-11 11:57:30 CET ]