[ Started: 2023-10-21 13:36:03 CEST ]
[ CARNIVAL v2.7.2 for BioC-3.18 from https://github.com/saezlab/CARNIVAL@master ]

Hit:1 http://de.archive.ubuntu.com/ubuntu jammy InRelease
Hit:2 https://cloud.r-project.org/bin/linux/ubuntu jammy-cran40/ InRelease
Get:3 http://de.archive.ubuntu.com/ubuntu jammy-updates InRelease [119 kB]
Hit:4 http://de.archive.ubuntu.com/ubuntu jammy-backports InRelease
Get:5 http://security.ubuntu.com/ubuntu jammy-security InRelease [110 kB]
Get:6 http://security.ubuntu.com/ubuntu jammy-security/main amd64 DEP-11 Metadata [43.0 kB]
Get:7 http://security.ubuntu.com/ubuntu jammy-security/universe amd64 DEP-11 Metadata [55.1 kB]
Fetched 327 kB in 1s (326 kB/s)
Reading package lists...
[1] "Libraries: "                     "/home/omnipath/local/R/4.3-3.18"
[3] "/home/omnipath/local/R/4.3"      "/usr/lib/R/library"             
trying URL 'https://cran.uni-muenster.de/src/contrib/remotes_2.4.2.1.tar.gz'
Content type 'application/x-gzip' length 152560 bytes (148 KB)
==================================================
downloaded 148 KB

trying URL 'https://cran.uni-muenster.de/src/contrib/BiocManager_1.30.22.tar.gz'
Content type 'application/x-gzip' length 582690 bytes (569 KB)
==================================================
downloaded 569 KB

* installing *source* package ‘remotes’ ...
** package ‘remotes’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (remotes)
* installing *source* package ‘BiocManager’ ...
** package ‘BiocManager’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BiocManager)

The downloaded source packages are in
	‘/tmp/RtmpvX3WIQ/downloaded_packages’
/usr/local/bin/curl: symbol lookup error: /usr/local/bin/curl: undefined symbol: curl_easy_header
Error in system2(curl, args = c("--silent", "--data-binary", shQuote(paste0("@",  : 
  error in running command
Calls: sapply -> lapply -> system_requirements -> system2
Execution halted
[ Finished: 2023-10-21 13:36:14 CEST ]