[ Started: 2023-11-13 16:36:47 CET ] [ CARNIVAL v2.7.2 for BioC-3.18 from https://github.com/saezlab/CARNIVAL@master ] [1] "Libraries: " "/home/omnipath/local/R/4.3-3.18" [3] "/home/omnipath/local/R/4.3" "/usr/lib/R/library" trying URL 'https://cran.uni-muenster.de/src/contrib/ranger_0.16.0.tar.gz' Content type 'application/x-gzip' length 165925 bytes (162 KB) ================================================== downloaded 162 KB * installing *source* package ‘ranger’ ... ** package ‘ranger’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.18/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.18/RcppEigen/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c AAA_check_cpp14.cpp -o AAA_check_cpp14.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.18/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.18/RcppEigen/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Data.cpp -o Data.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.18/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.18/RcppEigen/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c DataSparse.cpp -o DataSparse.o In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:397, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from DataSparse.h:31, from DataSparse.cpp:29: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 60 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 61 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 62 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 161 | template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 162 | template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 163 | template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 718 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 741 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 764 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 778 | ptranspose(PacketBlock& kernel) { | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 783 | ptranspose(PacketBlock& kernel) { | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 790 | ptranspose(PacketBlock& kernel) { | ^ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:377, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from DataSparse.h:31, from DataSparse.cpp:29: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from DataSparse.h:31, from DataSparse.cpp:29: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from DataSparse.h:31, from DataSparse.cpp:29: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from DataSparse.h:31, from DataSparse.cpp:29: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from DataSparse.h:31, from DataSparse.cpp:29: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/SparseCore:37, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Sparse:26, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:29, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from DataSparse.h:31, from DataSparse.cpp:29: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from DataSparse.h:31, from DataSparse.cpp:29: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) long long int>::half’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from DataSparse.h:31, from DataSparse.cpp:29: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from ‘class Eigen::Array’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1243:70: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]’ DataSparse.h:70:15: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Array >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Array > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, Eigen::Array > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Array >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1243:70: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]’ DataSparse.h:70:15: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:29: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1139:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]’ DataSparse.h:70:15: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:35: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1139:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]’ DataSparse.h:70:15: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.18/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.18/RcppEigen/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Forest.cpp -o Forest.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.18/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.18/RcppEigen/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ForestClassification.cpp -o ForestClassification.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.18/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.18/RcppEigen/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ForestProbability.cpp -o ForestProbability.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.18/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.18/RcppEigen/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ForestRegression.cpp -o ForestRegression.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.18/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.18/RcppEigen/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ForestSurvival.cpp -o ForestSurvival.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.18/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.18/RcppEigen/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c RcppExports.cpp -o RcppExports.o In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:397, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:5: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 60 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 61 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 62 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 161 | template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 162 | template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 163 | template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 718 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 741 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 764 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 778 | ptranspose(PacketBlock& kernel) { | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 783 | ptranspose(PacketBlock& kernel) { | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 790 | ptranspose(PacketBlock& kernel) { | ^ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:377, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:5: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:5: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:5: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:5: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:5: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/SparseCore:37, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Sparse:26, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:29, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:5: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:5: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) long long int>::half’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:5: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from ‘struct Eigen::internal::evaluator > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8: required from ‘struct Eigen::internal::evaluator >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:77:20: required from ‘void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix; Functor = Eigen::internal::assign_op; typename SrcXprType::Scalar = double; typename DstXprType::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::SparseMatrix; Src = Eigen::SparseMatrix; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:842:27: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:709:13: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenWrap.h:387:24: required from ‘Eigen::SparseMatrix Rcpp::traits::Exporter >::get() [with T = double]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/as.h:89:32: required from ‘T Rcpp::internal::as(SEXP, Rcpp::traits::r_type_generic_tag) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/as.h:152:31: required from ‘T Rcpp::as(SEXP) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/InputParameter.h:46:54: required from ‘Rcpp::ReferenceInputParameter::ReferenceInputParameter(SEXP) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ RcppExports.cpp:58:94: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:29: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:709:13: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenWrap.h:387:24: required from ‘Eigen::SparseMatrix Rcpp::traits::Exporter >::get() [with T = double]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/as.h:89:32: required from ‘T Rcpp::internal::as(SEXP, Rcpp::traits::r_type_generic_tag) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/as.h:152:31: required from ‘T Rcpp::as(SEXP) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/InputParameter.h:46:54: required from ‘Rcpp::ReferenceInputParameter::ReferenceInputParameter(SEXP) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ RcppExports.cpp:58:94: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:35: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:163:21: required from ‘Eigen::SparseCompressedBase::InnerIterator::InnerIterator(const Eigen::SparseCompressedBase&, Eigen::Index) [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:90:53: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:709:13: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenWrap.h:387:24: required from ‘Eigen::SparseMatrix Rcpp::traits::Exporter >::get() [with T = double]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/as.h:89:32: required from ‘T Rcpp::internal::as(SEXP, Rcpp::traits::r_type_generic_tag) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/as.h:152:31: required from ‘T Rcpp::as(SEXP) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/InputParameter.h:46:54: required from ‘Rcpp::ReferenceInputParameter::ReferenceInputParameter(SEXP) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ RcppExports.cpp:58:94: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.18/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.18/RcppEigen/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Tree.cpp -o Tree.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.18/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.18/RcppEigen/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c TreeClassification.cpp -o TreeClassification.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.18/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.18/RcppEigen/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c TreeProbability.cpp -o TreeProbability.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.18/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.18/RcppEigen/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c TreeRegression.cpp -o TreeRegression.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.18/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.18/RcppEigen/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c TreeSurvival.cpp -o TreeSurvival.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.18/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.18/RcppEigen/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rangerCpp.cpp -o rangerCpp.o In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:397, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from rangerCpp.cpp:28: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 60 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 61 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 62 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 161 | template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 162 | template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 163 | template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 718 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 741 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 764 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 778 | ptranspose(PacketBlock& kernel) { | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 783 | ptranspose(PacketBlock& kernel) { | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 790 | ptranspose(PacketBlock& kernel) { | ^ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:377, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from rangerCpp.cpp:28: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from rangerCpp.cpp:28: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from rangerCpp.cpp:28: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from rangerCpp.cpp:28: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from rangerCpp.cpp:28: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/SparseCore:37, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Sparse:26, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:29, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from rangerCpp.cpp:28: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from rangerCpp.cpp:28: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) long long int>::half’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from rangerCpp.cpp:28: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from ‘class Eigen::Array’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1243:70: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]’ DataSparse.h:70:15: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Array >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Array > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, Eigen::Array > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Array >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1243:70: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]’ DataSparse.h:70:15: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:29: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1139:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]’ DataSparse.h:70:15: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:35: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1139:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar = double; Eigen::Index = long int]’ DataSparse.h:70:15: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.18/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.18/RcppEigen/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c utility.cpp -o utility.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DR_BUILD -I'/home/omnipath/local/R/4.3-3.18/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.18/RcppEigen/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c utilityRcpp.cpp -o utilityRcpp.o g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -o ranger.so AAA_check_cpp14.o Data.o DataSparse.o Forest.o ForestClassification.o ForestProbability.o ForestRegression.o ForestSurvival.o RcppExports.o Tree.o TreeClassification.o TreeProbability.o TreeRegression.o TreeSurvival.o rangerCpp.o utility.o utilityRcpp.o -L/usr/lib/R/lib -lR installing to /home/omnipath/local/R/4.3-3.18/00LOCK-ranger/00new/ranger/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ranger) The downloaded source packages are in ‘/tmp/RtmpUjCe58/downloaded_packages’ 'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")' for details. Replacement repositories: CRAN: https://cloud.r-project.org Bioconductor version 3.18 (BiocManager 1.30.22), R 4.3.1 (2023-06-16) Old packages: 'stringi' trying URL 'https://cloud.r-project.org/src/contrib/stringi_1.8.1.tar.gz' Content type 'application/x-gzip' length 11917201 bytes (11.4 MB) ================================================== downloaded 11.4 MB * installing *source* package ‘stringi’ ... ** package ‘stringi’ successfully unpacked and MD5 sums checked ** using staged installation checking for R_HOME... /usr/lib/R checking for R... /usr/lib/R/bin/R checking for endianness... little checking for cat... /usr/bin/cat checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ -std=gnu++17 accepts -g... yes checking for g++ -std=gnu++17 option to enable C++11 features... none needed checking whether the C++ compiler supports the 'long long' type... yes checking whether the compiler implements namespaces... yes checking whether the compiler supports the Standard Template Library... yes checking whether std::map is available... yes checking for pkg-config... /usr/bin/pkg-config checking with 'pkg-config' for the system ICU4C (icu-i18n icu-uc)... 70.1 checking for ICU4C >= 61... yes checking for additional CPPFLAGS, LDFLAGS, and LIBS required... done checking whether an ICU4C-based project can be built... yes checking programmatically for sufficient U_ICU_VERSION_MAJOR_NUM... yes checking the capabilities of the ICU data library (ucnv, uloc, utrans)... yes checking the capabilities of the ICU data library (ucol)... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for elf.h... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/uconfig_local.h config.status: creating src/install.libs.R *** stringi configure summary: ICU_FOUND=1 STRINGI_CXXSTD= STRINGI_CXXFLAGS= -fpic STRINGI_CPPFLAGS=-I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H STRINGI_LDFLAGS=-L/usr/lib/x86_64-linux-gnu STRINGI_LIBS=-licui18n -licuuc -licudata *** Compiler settings used: CXX=g++ -std=gnu++17 CXXFLAGS=-g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fpic CPPFLAGS= -UDEBUG -DNDEBUG LD=g++ -std=gnu++17 LDFLAGS= LIBS= ** libs using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_brkiter.cpp -o stri_brkiter.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_collator.cpp -o stri_collator.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_common.cpp -o stri_common.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_compare.cpp -o stri_compare.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_container_base.cpp -o stri_container_base.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_container_bytesearch.cpp -o stri_container_bytesearch.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_container_listint.cpp -o stri_container_listint.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_container_listraw.cpp -o stri_container_listraw.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_container_listutf8.cpp -o stri_container_listutf8.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_container_regex.cpp -o stri_container_regex.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_container_usearch.cpp -o stri_container_usearch.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_container_utf16.cpp -o stri_container_utf16.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_container_utf8.cpp -o stri_container_utf8.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_container_utf8_indexable.cpp -o stri_container_utf8_indexable.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_encoding_conversion.cpp -o stri_encoding_conversion.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_encoding_detection.cpp -o stri_encoding_detection.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_encoding_management.cpp -o stri_encoding_management.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_escape.cpp -o stri_escape.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_exception.cpp -o stri_exception.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_ICU_settings.cpp -o stri_ICU_settings.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_join.cpp -o stri_join.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_length.cpp -o stri_length.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_pad.cpp -o stri_pad.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_prepare_arg.cpp -o stri_prepare_arg.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_random.cpp -o stri_random.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_reverse.cpp -o stri_reverse.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_class_count.cpp -o stri_search_class_count.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_class_detect.cpp -o stri_search_class_detect.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_class_extract.cpp -o stri_search_class_extract.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_class_locate.cpp -o stri_search_class_locate.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_class_replace.cpp -o stri_search_class_replace.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_class_split.cpp -o stri_search_class_split.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_class_startsendswith.cpp -o stri_search_class_startsendswith.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_class_subset.cpp -o stri_search_class_subset.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_class_trim.cpp -o stri_search_class_trim.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_common.cpp -o stri_search_common.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_coll_count.cpp -o stri_search_coll_count.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_coll_detect.cpp -o stri_search_coll_detect.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_coll_extract.cpp -o stri_search_coll_extract.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_coll_locate.cpp -o stri_search_coll_locate.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_coll_replace.cpp -o stri_search_coll_replace.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_coll_split.cpp -o stri_search_coll_split.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_coll_startsendswith.cpp -o stri_search_coll_startsendswith.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_coll_subset.cpp -o stri_search_coll_subset.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_boundaries_count.cpp -o stri_search_boundaries_count.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_boundaries_extract.cpp -o stri_search_boundaries_extract.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_boundaries_locate.cpp -o stri_search_boundaries_locate.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_boundaries_split.cpp -o stri_search_boundaries_split.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_fixed_count.cpp -o stri_search_fixed_count.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_fixed_detect.cpp -o stri_search_fixed_detect.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_fixed_extract.cpp -o stri_search_fixed_extract.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_fixed_locate.cpp -o stri_search_fixed_locate.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_fixed_replace.cpp -o stri_search_fixed_replace.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_fixed_split.cpp -o stri_search_fixed_split.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_fixed_subset.cpp -o stri_search_fixed_subset.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_fixed_startsendswith.cpp -o stri_search_fixed_startsendswith.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_in.cpp -o stri_search_in.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_other_split.cpp -o stri_search_other_split.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_regex_count.cpp -o stri_search_regex_count.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_regex_detect.cpp -o stri_search_regex_detect.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_regex_extract.cpp -o stri_search_regex_extract.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_regex_locate.cpp -o stri_search_regex_locate.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_regex_match.cpp -o stri_search_regex_match.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_regex_replace.cpp -o stri_search_regex_replace.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_regex_split.cpp -o stri_search_regex_split.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_search_regex_subset.cpp -o stri_search_regex_subset.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_sort.cpp -o stri_sort.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_sprintf.cpp -o stri_sprintf.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_stats.cpp -o stri_stats.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_string8.cpp -o stri_string8.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_stringi.cpp -o stri_stringi.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_sub.cpp -o stri_sub.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_test.cpp -o stri_test.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_time_zone.cpp -o stri_time_zone.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_time_calendar.cpp -o stri_time_calendar.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_time_symbols.cpp -o stri_time_symbols.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_time_format.cpp -o stri_time_format.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_trans_casemap.cpp -o stri_trans_casemap.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_trans_other.cpp -o stri_trans_other.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_trans_normalization.cpp -o stri_trans_normalization.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_trans_transliterate.cpp -o stri_trans_transliterate.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_ucnv.cpp -o stri_ucnv.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_uloc.cpp -o stri_uloc.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_utils.cpp -o stri_utils.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -fpic -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stri_wrap.cpp -o stri_wrap.o g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -o stringi.so stri_brkiter.o stri_collator.o stri_common.o stri_compare.o stri_container_base.o stri_container_bytesearch.o stri_container_listint.o stri_container_listraw.o stri_container_listutf8.o stri_container_regex.o stri_container_usearch.o stri_container_utf16.o stri_container_utf8.o stri_container_utf8_indexable.o stri_encoding_conversion.o stri_encoding_detection.o stri_encoding_management.o stri_escape.o stri_exception.o stri_ICU_settings.o stri_join.o stri_length.o stri_pad.o stri_prepare_arg.o stri_random.o stri_reverse.o stri_search_class_count.o stri_search_class_detect.o stri_search_class_extract.o stri_search_class_locate.o stri_search_class_replace.o stri_search_class_split.o stri_search_class_startsendswith.o stri_search_class_subset.o stri_search_class_trim.o stri_search_common.o stri_search_coll_count.o stri_search_coll_detect.o stri_search_coll_extract.o stri_search_coll_locate.o stri_search_coll_replace.o stri_search_coll_split.o stri_search_coll_startsendswith.o stri_search_coll_subset.o stri_search_boundaries_count.o stri_search_boundaries_extract.o stri_search_boundaries_locate.o stri_search_boundaries_split.o stri_search_fixed_count.o stri_search_fixed_detect.o stri_search_fixed_extract.o stri_search_fixed_locate.o stri_search_fixed_replace.o stri_search_fixed_split.o stri_search_fixed_subset.o stri_search_fixed_startsendswith.o stri_search_in.o stri_search_other_split.o stri_search_regex_count.o stri_search_regex_detect.o stri_search_regex_extract.o stri_search_regex_locate.o stri_search_regex_match.o stri_search_regex_replace.o stri_search_regex_split.o stri_search_regex_subset.o stri_sort.o stri_sprintf.o stri_stats.o stri_string8.o stri_stringi.o stri_sub.o stri_test.o stri_time_zone.o stri_time_calendar.o stri_time_symbols.o stri_time_format.o stri_trans_casemap.o stri_trans_other.o stri_trans_normalization.o stri_trans_transliterate.o stri_ucnv.o stri_uloc.o stri_utils.o stri_wrap.o -L/usr/lib/x86_64-linux-gnu -licui18n -licuuc -licudata -L/usr/lib/R/lib -lR installing via 'install.libs.R' to /home/omnipath/local/R/4.3-3.18/00LOCK-stringi/00new/stringi ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stringi) The downloaded source packages are in ‘/tmp/RtmpUjCe58/downloaded_packages’ 'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")' for details. Replacement repositories: CRAN: https://cloud.r-project.org Bioconductor version 3.18 (BiocManager 1.30.22), R 4.3.1 (2023-06-16) Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TRUE` to re-install: 'BiocCheck' Skipping 1 packages ahead of CRAN: stringi [ Finished: 2023-11-13 16:39:05 CET ]