[ Started: 2023-11-18 11:51:52 CET ] [ CARNIVAL v2.7.2 for BioC-3.18 from https://github.com/saezlab/CARNIVAL@master ] [1] "Libraries: " "/home/omnipath/local/R/4.3-3.18" [3] "/home/omnipath/local/R/4.3" "/usr/lib/R/library" also installing the dependency ‘Matrix’ trying URL 'https://cran.uni-muenster.de/src/contrib/Matrix_1.6-3.tar.gz' Content type 'application/x-gzip' length 2881169 bytes (2.7 MB) ================================================== downloaded 2.7 MB trying URL 'https://cran.uni-muenster.de/src/contrib/dplyr_1.1.4.tar.gz' Content type 'application/x-gzip' length 1207521 bytes (1.2 MB) ================================================== downloaded 1.2 MB trying URL 'https://cran.uni-muenster.de/src/contrib/R.utils_2.12.3.tar.gz' Content type 'application/x-gzip' length 364188 bytes (355 KB) ================================================== downloaded 355 KB trying URL 'https://cran.uni-muenster.de/src/contrib/Seurat_5.0.1.tar.gz' Content type 'application/x-gzip' length 2225638 bytes (2.1 MB) ================================================== downloaded 2.1 MB trying URL 'https://cran.uni-muenster.de/src/contrib/SeuratObject_5.0.1.tar.gz' Content type 'application/x-gzip' length 747880 bytes (730 KB) ================================================== downloaded 730 KB trying URL 'https://cran.uni-muenster.de/src/contrib/shiny_1.8.0.tar.gz' Content type 'application/x-gzip' length 2826485 bytes (2.7 MB) ================================================== downloaded 2.7 MB * installing *source* package ‘Matrix’ ... ** package ‘Matrix’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ gcc -I"/usr/share/R/include" -DNDEBUG -I./SuiteSparse_config -DNTIMER -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Csparse.c -o Csparse.o gcc -I"/usr/share/R/include" -DNDEBUG -I./SuiteSparse_config -DNTIMER -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c abIndex.c -o abIndex.o gcc -I"/usr/share/R/include" -DNDEBUG -I./SuiteSparse_config -DNTIMER -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c attrib.c -o attrib.o gcc -I"/usr/share/R/include" -DNDEBUG -I./SuiteSparse_config -DNTIMER -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bind.c -o bind.o gcc -I"/usr/share/R/include" -DNDEBUG -I./SuiteSparse_config -DNTIMER -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c chm_common.c -o chm_common.o gcc -I"/usr/share/R/include" -DNDEBUG -I./SuiteSparse_config -DNTIMER -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c cholmod-etc.c -o cholmod-etc.o gcc -I"/usr/share/R/include" -DNDEBUG -I./SuiteSparse_config -DNTIMER -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c coerce.c -o coerce.o gcc -I"/usr/share/R/include" -DNDEBUG -I./SuiteSparse_config -DNTIMER -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c cs.c -o cs.o gcc -I"/usr/share/R/include" -DNDEBUG -I./SuiteSparse_config -DNTIMER -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c cs-etc.c -o cs-etc.o gcc -I"/usr/share/R/include" -DNDEBUG -I./SuiteSparse_config -DNTIMER -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dense.c -o dense.o gcc -I"/usr/share/R/include" -DNDEBUG -I./SuiteSparse_config -DNTIMER -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c determinant.c -o determinant.o gcc -I"/usr/share/R/include" -DNDEBUG -I./SuiteSparse_config -DNTIMER -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dgCMatrix.c -o dgCMatrix.o gcc -I"/usr/share/R/include" -DNDEBUG -I./SuiteSparse_config -DNTIMER -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dgeMatrix.c -o dgeMatrix.o gcc -I"/usr/share/R/include" -DNDEBUG -I./SuiteSparse_config -DNTIMER -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c factorizations.c -o factorizations.o gcc -I"/usr/share/R/include" -DNDEBUG -I./SuiteSparse_config -DNTIMER -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c idz.c -o idz.o gcc -I"/usr/share/R/include" -DNDEBUG -I./SuiteSparse_config -DNTIMER -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o gcc -I"/usr/share/R/include" -DNDEBUG -I./SuiteSparse_config -DNTIMER -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c kappa.c -o kappa.o gcc -I"/usr/share/R/include" -DNDEBUG -I./SuiteSparse_config -DNTIMER -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c objects.c -o objects.o gcc -I"/usr/share/R/include" -DNDEBUG -I./SuiteSparse_config -DNTIMER -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c perm.c -o perm.o gcc -I"/usr/share/R/include" -DNDEBUG -I./SuiteSparse_config -DNTIMER -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c products.c -o products.o gcc -I"/usr/share/R/include" -DNDEBUG -I./SuiteSparse_config -DNTIMER -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c solve.c -o solve.o gcc -I"/usr/share/R/include" -DNDEBUG -I./SuiteSparse_config -DNTIMER -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sparse.c -o sparse.o gcc -I"/usr/share/R/include" -DNDEBUG -I./SuiteSparse_config -DNTIMER -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sparseVector.c -o sparseVector.o gcc -I"/usr/share/R/include" -DNDEBUG -I./SuiteSparse_config -DNTIMER -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c subscript.c -o subscript.o gcc -I"/usr/share/R/include" -DNDEBUG -I./SuiteSparse_config -DNTIMER -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c utils-R.c -o utils-R.o gcc -I"/usr/share/R/include" -DNDEBUG -I./SuiteSparse_config -DNTIMER -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c utils.c -o utils.o gcc -I"/usr/share/R/include" -DNDEBUG -I./SuiteSparse_config -DNTIMER -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c validity.c -o validity.o make[1]: Entering directory '/tmp/RtmpxFg3VY/R.INSTALL288128649e8614/Matrix/src/CHOLMOD' ( cd Lib ; make clean ) make[2]: Entering directory '/tmp/RtmpxFg3VY/R.INSTALL288128649e8614/Matrix/src/CHOLMOD/Lib' make[2]: Leaving directory '/tmp/RtmpxFg3VY/R.INSTALL288128649e8614/Matrix/src/CHOLMOD/Lib' make[1]: Leaving directory '/tmp/RtmpxFg3VY/R.INSTALL288128649e8614/Matrix/src/CHOLMOD' make[1]: Entering directory '/tmp/RtmpxFg3VY/R.INSTALL288128649e8614/Matrix/src/COLAMD' ( cd Source ; make clean ) make[2]: Entering directory '/tmp/RtmpxFg3VY/R.INSTALL288128649e8614/Matrix/src/COLAMD/Source' make[2]: Leaving directory '/tmp/RtmpxFg3VY/R.INSTALL288128649e8614/Matrix/src/COLAMD/Source' make[1]: Leaving directory '/tmp/RtmpxFg3VY/R.INSTALL288128649e8614/Matrix/src/COLAMD' make[1]: Entering directory '/tmp/RtmpxFg3VY/R.INSTALL288128649e8614/Matrix/src/AMD' ( cd Source ; make clean ) make[2]: Entering directory '/tmp/RtmpxFg3VY/R.INSTALL288128649e8614/Matrix/src/AMD/Source' make[2]: Leaving directory '/tmp/RtmpxFg3VY/R.INSTALL288128649e8614/Matrix/src/AMD/Source' make[1]: Leaving directory '/tmp/RtmpxFg3VY/R.INSTALL288128649e8614/Matrix/src/AMD' make[1]: Entering directory '/tmp/RtmpxFg3VY/R.INSTALL288128649e8614/Matrix/src/SuiteSparse_config' make[1]: Leaving directory '/tmp/RtmpxFg3VY/R.INSTALL288128649e8614/Matrix/src/SuiteSparse_config' make[1]: Entering directory '/tmp/RtmpxFg3VY/R.INSTALL288128649e8614/Matrix/src/CHOLMOD' ( cd Lib ; make -f "/usr/lib/R/etc/Makeconf" -f Makefile ) make[2]: Entering directory '/tmp/RtmpxFg3VY/R.INSTALL288128649e8614/Matrix/src/CHOLMOD/Lib' gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Core/cholmod_aat.c -o cholmod_aat.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Core/cholmod_add.c -o cholmod_add.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Core/cholmod_band.c -o cholmod_band.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Core/cholmod_change_factor.c -o cholmod_change_factor.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Core/cholmod_common.c -o cholmod_common.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Core/cholmod_complex.c -o cholmod_complex.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Core/cholmod_copy.c -o cholmod_copy.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Core/cholmod_dense.c -o cholmod_dense.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Core/cholmod_error.c -o cholmod_error.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Core/cholmod_factor.c -o cholmod_factor.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Core/cholmod_memory.c -o cholmod_memory.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Core/cholmod_sparse.c -o cholmod_sparse.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Core/cholmod_transpose.c -o cholmod_transpose.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Core/cholmod_triplet.c -o cholmod_triplet.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Core/cholmod_version.c -o cholmod_version.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Check/cholmod_check.c -o cholmod_check.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Check/cholmod_read.c -o cholmod_read.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Check/cholmod_write.c -o cholmod_write.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Cholesky/cholmod_amd.c -o cholmod_amd.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Cholesky/cholmod_analyze.c -o cholmod_analyze.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Cholesky/cholmod_colamd.c -o cholmod_colamd.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Cholesky/cholmod_etree.c -o cholmod_etree.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Cholesky/cholmod_factorize.c -o cholmod_factorize.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Cholesky/cholmod_postorder.c -o cholmod_postorder.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Cholesky/cholmod_rcond.c -o cholmod_rcond.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Cholesky/cholmod_resymbol.c -o cholmod_resymbol.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_rowcolcounts.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Cholesky/cholmod_rowfac.c -o cholmod_rowfac.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Cholesky/cholmod_solve.c -o cholmod_solve.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Cholesky/cholmod_spsolve.c -o cholmod_spsolve.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../MatrixOps/cholmod_drop.c -o cholmod_drop.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../MatrixOps/cholmod_horzcat.c -o cholmod_horzcat.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../MatrixOps/cholmod_norm.c -o cholmod_norm.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../MatrixOps/cholmod_scale.c -o cholmod_scale.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../MatrixOps/cholmod_sdmult.c -o cholmod_sdmult.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../MatrixOps/cholmod_ssmult.c -o cholmod_ssmult.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../MatrixOps/cholmod_submatrix.c -o cholmod_submatrix.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../MatrixOps/cholmod_vertcat.c -o cholmod_vertcat.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../MatrixOps/cholmod_symmetry.c -o cholmod_symmetry.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Modify/cholmod_rowadd.c -o cholmod_rowadd.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Modify/cholmod_rowdel.c -o cholmod_rowdel.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Modify/cholmod_updown.c -o cholmod_updown.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Supernodal/cholmod_super_numeric.c -o cholmod_super_numeric.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Supernodal/cholmod_super_solve.c -o cholmod_super_solve.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_super_symbolic.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Core/cholmod_aat.c -o cholmod_l_aat.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Core/cholmod_add.c -o cholmod_l_add.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Core/cholmod_band.c -o cholmod_l_band.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Core/cholmod_change_factor.c -o cholmod_l_change_factor.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Core/cholmod_common.c -o cholmod_l_common.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Core/cholmod_complex.c -o cholmod_l_complex.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Core/cholmod_copy.c -o cholmod_l_copy.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Core/cholmod_dense.c -o cholmod_l_dense.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Core/cholmod_error.c -o cholmod_l_error.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Core/cholmod_factor.c -o cholmod_l_factor.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Core/cholmod_memory.c -o cholmod_l_memory.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Core/cholmod_sparse.c -o cholmod_l_sparse.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Core/cholmod_transpose.c -o cholmod_l_transpose.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Core/cholmod_triplet.c -o cholmod_l_triplet.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Core/cholmod_version.c -o cholmod_l_version.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Check/cholmod_check.c -o cholmod_l_check.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Check/cholmod_read.c -o cholmod_l_read.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Check/cholmod_write.c -o cholmod_l_write.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Cholesky/cholmod_amd.c -o cholmod_l_amd.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Cholesky/cholmod_analyze.c -o cholmod_l_analyze.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Cholesky/cholmod_colamd.c -o cholmod_l_colamd.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Cholesky/cholmod_etree.c -o cholmod_l_etree.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Cholesky/cholmod_factorize.c -o cholmod_l_factorize.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Cholesky/cholmod_postorder.c -o cholmod_l_postorder.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Cholesky/cholmod_rcond.c -o cholmod_l_rcond.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Cholesky/cholmod_resymbol.c -o cholmod_l_resymbol.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_l_rowcolcounts.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Cholesky/cholmod_rowfac.c -o cholmod_l_rowfac.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Cholesky/cholmod_solve.c -o cholmod_l_solve.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Cholesky/cholmod_spsolve.c -o cholmod_l_spsolve.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../MatrixOps/cholmod_drop.c -o cholmod_l_drop.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../MatrixOps/cholmod_horzcat.c -o cholmod_l_horzcat.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../MatrixOps/cholmod_norm.c -o cholmod_l_norm.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../MatrixOps/cholmod_scale.c -o cholmod_l_scale.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../MatrixOps/cholmod_sdmult.c -o cholmod_l_sdmult.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../MatrixOps/cholmod_ssmult.c -o cholmod_l_ssmult.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../MatrixOps/cholmod_submatrix.c -o cholmod_l_submatrix.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../MatrixOps/cholmod_vertcat.c -o cholmod_l_vertcat.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../MatrixOps/cholmod_symmetry.c -o cholmod_l_symmetry.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Modify/cholmod_rowadd.c -o cholmod_l_rowadd.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Modify/cholmod_rowdel.c -o cholmod_l_rowdel.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Modify/cholmod_updown.c -o cholmod_l_updown.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Supernodal/cholmod_super_numeric.c -o cholmod_l_super_numeric.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Supernodal/cholmod_super_solve.c -o cholmod_l_super_solve.o gcc -I"/usr/share/R/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DDLONG -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_l_super_symbolic.o ar -rucs ../../CHOLMOD.a cholmod_aat.o cholmod_add.o cholmod_band.o cholmod_change_factor.o cholmod_common.o cholmod_complex.o cholmod_copy.o cholmod_dense.o cholmod_error.o cholmod_factor.o cholmod_memory.o cholmod_sparse.o cholmod_transpose.o cholmod_triplet.o cholmod_version.o cholmod_check.o cholmod_read.o cholmod_write.o cholmod_amd.o cholmod_analyze.o cholmod_colamd.o cholmod_etree.o cholmod_factorize.o cholmod_postorder.o cholmod_rcond.o cholmod_resymbol.o cholmod_rowcolcounts.o cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o cholmod_drop.o cholmod_horzcat.o cholmod_norm.o cholmod_scale.o cholmod_sdmult.o cholmod_ssmult.o cholmod_submatrix.o cholmod_vertcat.o cholmod_symmetry.o cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o cholmod_super_numeric.o cholmod_super_solve.o cholmod_super_symbolic.o cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o cholmod_l_version.o cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o cholmod_l_super_numeric.o cholmod_l_super_solve.o cholmod_l_super_symbolic.o ar: `u' modifier ignored since `D' is the default (see `U') make[2]: Leaving directory '/tmp/RtmpxFg3VY/R.INSTALL288128649e8614/Matrix/src/CHOLMOD/Lib' make[1]: Leaving directory '/tmp/RtmpxFg3VY/R.INSTALL288128649e8614/Matrix/src/CHOLMOD' make[1]: Entering directory '/tmp/RtmpxFg3VY/R.INSTALL288128649e8614/Matrix/src/COLAMD' ( cd Source ; make -f "/usr/lib/R/etc/Makeconf" -f Makefile lib ) make[2]: Entering directory '/tmp/RtmpxFg3VY/R.INSTALL288128649e8614/Matrix/src/COLAMD/Source' gcc -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c colamd.c -o colamd.o gcc -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I../Include -DDLONG -c colamd.c -o colamd_l.o ar -rucs ../../COLAMD.a colamd.o colamd_l.o ar: `u' modifier ignored since `D' is the default (see `U') make[2]: Leaving directory '/tmp/RtmpxFg3VY/R.INSTALL288128649e8614/Matrix/src/COLAMD/Source' make[1]: Leaving directory '/tmp/RtmpxFg3VY/R.INSTALL288128649e8614/Matrix/src/COLAMD' make[1]: Entering directory '/tmp/RtmpxFg3VY/R.INSTALL288128649e8614/Matrix/src/AMD' ( cd Source ; make -f "/usr/lib/R/etc/Makeconf" -f Makefile lib ) make[2]: Entering directory '/tmp/RtmpxFg3VY/R.INSTALL288128649e8614/Matrix/src/AMD/Source' gcc -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I../Include -DDINT -c amd_aat.c -o amd_i_aat.o gcc -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I../Include -DDLONG -c amd_aat.c -o amd_l_aat.o gcc -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I../Include -DDINT -c amd_1.c -o amd_i_1.o gcc -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I../Include -DDLONG -c amd_1.c -o amd_l_1.o gcc -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I../Include -DDINT -c amd_2.c -o amd_i_2.o gcc -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I../Include -DDLONG -c amd_2.c -o amd_l_2.o gcc -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I../Include -DDINT -c amd_postorder.c -o amd_i_postorder.o gcc -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I../Include -DDLONG -c amd_postorder.c -o amd_l_postorder.o gcc -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I../Include -DDINT -c amd_post_tree.c -o amd_i_post_tree.o gcc -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I../Include -DDLONG -c amd_post_tree.c -o amd_l_post_tree.o gcc -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I../Include -DDINT -c amd_defaults.c -o amd_i_defaults.o gcc -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I../Include -DDLONG -c amd_defaults.c -o amd_l_defaults.o gcc -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I../Include -DDINT -c amd_order.c -o amd_i_order.o gcc -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I../Include -DDLONG -c amd_order.c -o amd_l_order.o gcc -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I../Include -DDINT -c amd_control.c -o amd_i_control.o gcc -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I../Include -DDLONG -c amd_control.c -o amd_l_control.o gcc -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I../Include -DDINT -c amd_info.c -o amd_i_info.o gcc -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I../Include -DDLONG -c amd_info.c -o amd_l_info.o gcc -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I../Include -DDINT -c amd_valid.c -o amd_i_valid.o gcc -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I../Include -DDLONG -c amd_valid.c -o amd_l_valid.o gcc -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I../Include -DDINT -c amd_preprocess.c -o amd_i_preprocess.o gcc -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I../Include -DDLONG -c amd_preprocess.c -o amd_l_preprocess.o gcc -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I../Include -DDINT -c amd_dump.c -o amd_i_dump.o gcc -I"/usr/share/R/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I../Include -DDLONG -c amd_dump.c -o amd_l_dump.o ar -rucs ../../AMD.a amd_i_aat.o amd_l_aat.o amd_i_1.o amd_l_1.o amd_i_2.o amd_l_2.o amd_i_postorder.o amd_l_postorder.o amd_i_post_tree.o amd_l_post_tree.o amd_i_defaults.o amd_l_defaults.o amd_i_order.o amd_l_order.o amd_i_control.o amd_l_control.o amd_i_info.o amd_l_info.o amd_i_valid.o amd_l_valid.o amd_i_preprocess.o amd_l_preprocess.o amd_i_dump.o amd_l_dump.o ar: `u' modifier ignored since `D' is the default (see `U') make[2]: Leaving directory '/tmp/RtmpxFg3VY/R.INSTALL288128649e8614/Matrix/src/AMD/Source' make[1]: Leaving directory '/tmp/RtmpxFg3VY/R.INSTALL288128649e8614/Matrix/src/AMD' make[1]: Entering directory '/tmp/RtmpxFg3VY/R.INSTALL288128649e8614/Matrix/src/SuiteSparse_config' gcc -I"/usr/share/R/include" -DNDEBUG -DNTIMER -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c SuiteSparse_config.c -o SuiteSparse_config.o ar -rucs ../SuiteSparse_config.a SuiteSparse_config.o ar: `u' modifier ignored since `D' is the default (see `U') make[1]: Leaving directory '/tmp/RtmpxFg3VY/R.INSTALL288128649e8614/Matrix/src/SuiteSparse_config' gcc -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -o Matrix.so Csparse.o abIndex.o attrib.o bind.o chm_common.o cholmod-etc.o coerce.o cs.o cs-etc.o dense.o determinant.o dgCMatrix.o dgeMatrix.o factorizations.o idz.o init.o kappa.o objects.o perm.o products.o solve.o sparse.o sparseVector.o subscript.o utils-R.o utils.o validity.o CHOLMOD.a COLAMD.a AMD.a SuiteSparse_config.a -llapack -lblas -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR installing to /home/omnipath/local/R/4.3-3.18/00LOCK-Matrix/00new/Matrix/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘zapsmall’ from package ‘base’ in package ‘Matrix’ in method for ‘coerce’ with signature ‘"matrix.csc","dgCMatrix"’: no definition for class “matrix.csc” in method for ‘coerce’ with signature ‘"matrix.csr","dgRMatrix"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"matrix.coo","dgTMatrix"’: no definition for class “matrix.coo” in method for ‘coerce’ with signature ‘"matrix.csr","dgCMatrix"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"matrix.coo","dgCMatrix"’: no definition for class “matrix.coo” in method for ‘coerce’ with signature ‘"matrix.csc","CsparseMatrix"’: no definition for class “matrix.csc” in method for ‘coerce’ with signature ‘"matrix.csc","RsparseMatrix"’: no definition for class “matrix.csc” in method for ‘coerce’ with signature ‘"matrix.csc","TsparseMatrix"’: no definition for class “matrix.csc” in method for ‘coerce’ with signature ‘"matrix.csr","CsparseMatrix"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"matrix.csr","RsparseMatrix"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"matrix.csr","TsparseMatrix"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"matrix.coo","CsparseMatrix"’: no definition for class “matrix.coo” in method for ‘coerce’ with signature ‘"matrix.coo","RsparseMatrix"’: no definition for class “matrix.coo” in method for ‘coerce’ with signature ‘"matrix.coo","TsparseMatrix"’: no definition for class “matrix.coo” in method for ‘coerce’ with signature ‘"matrix.csc","sparseMatrix"’: no definition for class “matrix.csc” in method for ‘coerce’ with signature ‘"matrix.csr","sparseMatrix"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"matrix.coo","sparseMatrix"’: no definition for class “matrix.coo” in method for ‘coerce’ with signature ‘"matrix.csc","Matrix"’: no definition for class “matrix.csc” in method for ‘coerce’ with signature ‘"matrix.csr","Matrix"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"matrix.coo","Matrix"’: no definition for class “matrix.coo” in method for ‘coerce’ with signature ‘"dgCMatrix","matrix.csc"’: no definition for class “matrix.csc” in method for ‘coerce’ with signature ‘"dgRMatrix","matrix.csr"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"dgTMatrix","matrix.coo"’: no definition for class “matrix.coo” in method for ‘coerce’ with signature ‘"Matrix","matrix.csc"’: no definition for class “matrix.csc” in method for ‘coerce’ with signature ‘"Matrix","matrix.csr"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"Matrix","matrix.coo"’: no definition for class “matrix.coo” Creating a generic function for ‘drop’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘chol2inv’ from ‘base’ in package ‘Matrix’ (from the saved implicit definition) Creating a generic function for ‘chol2inv’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘diag’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘colSums’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘colMeans’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘rowSums’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘rowMeans’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘diag<-’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘unname’ from package ‘base’ in package ‘Matrix’ in method for ‘coerce’ with signature ‘"graphAM","TsparseMatrix"’: no definition for class “graphAM” in method for ‘coerce’ with signature ‘"graphNEL","TsparseMatrix"’: no definition for class “graphNEL” in method for ‘coerce’ with signature ‘"graph","CsparseMatrix"’: no definition for class “graph” in method for ‘coerce’ with signature ‘"graph","RsparseMatrix"’: no definition for class “graph” in method for ‘coerce’ with signature ‘"graph","TsparseMatrix"’: no definition for class “graph” in method for ‘coerce’ with signature ‘"graph","sparseMatrix"’: no definition for class “graph” in method for ‘coerce’ with signature ‘"graph","Matrix"’: no definition for class “graph” in method for ‘coerce’ with signature ‘"TsparseMatrix","graphNEL"’: no definition for class “graphNEL” in method for ‘coerce’ with signature ‘"Matrix","graphNEL"’: no definition for class “graphNEL” in method for ‘coerce’ with signature ‘"Matrix","graph"’: no definition for class “graph” Creating a generic function for ‘norm’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘rcond’ from ‘base’ in package ‘Matrix’ (from the saved implicit definition) Creating a generic function for ‘rcond’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘cov2cor’ from package ‘stats’ in package ‘Matrix’ Creating a generic function for ‘crossprod’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘tcrossprod’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘qr.Q’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘qr.R’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘qr.X’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘qr.coef’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘qr.fitted’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘qr.resid’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘qr.qty’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘qr.qy’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘toeplitz’ from ‘stats’ in package ‘Matrix’ (from the saved implicit definition) Creating a generic function for ‘toeplitz’ from package ‘stats’ in package ‘Matrix’ Creating a generic function for ‘which’ from package ‘base’ in package ‘Matrix’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Matrix) * installing *source* package ‘dplyr’ ... ** package ‘dplyr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c chop.cpp -o chop.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c filter.cpp -o filter.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c funs.cpp -o funs.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c group_by.cpp -o group_by.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c group_data.cpp -o group_data.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c imports.cpp -o imports.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c init.cpp -o init.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mask.cpp -o mask.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mutate.cpp -o mutate.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c reconstruct.cpp -o reconstruct.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c slice.cpp -o slice.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c summarise.cpp -o summarise.o g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -o dplyr.so chop.o filter.o funs.o group_by.o group_data.o imports.o init.o mask.o mutate.o reconstruct.o slice.o summarise.o -L/usr/lib/R/lib -lR installing to /home/omnipath/local/R/4.3-3.18/00LOCK-dplyr/00new/dplyr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dplyr) * installing *source* package ‘R.utils’ ... ** package ‘R.utils’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Warning in setGenericS3.default(name, export = exportGeneric, envir = envir, : Renamed the preexisting function warnings to warnings.default, which was defined in environment R.utils. ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (R.utils) * installing *source* package ‘shiny’ ... ** package ‘shiny’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shiny) * installing *source* package ‘SeuratObject’ ... ** package ‘SeuratObject’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.18/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.18/RcppEigen/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c RcppExports.cpp -o RcppExports.o In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:397, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 60 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 61 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 62 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 161 | template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 162 | template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 163 | template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 718 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 741 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 764 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 778 | ptranspose(PacketBlock& kernel) { | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 783 | ptranspose(PacketBlock& kernel) { | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 790 | ptranspose(PacketBlock& kernel) { | ^ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:377, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/SparseCore:37, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Sparse:26, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:29, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) long long int>::half’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenWrap.h:110:39: required from ‘SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/internal/wrap.h:776:49: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/internal/wrap.h:787:39: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/internal/wrap.h:807:52: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/internal/wrap_end.h:30:38: required from ‘SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ RcppExports.cpp:32:33: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from ‘struct Eigen::internal::evaluator > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8: required from ‘struct Eigen::internal::evaluator >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:77:20: required from ‘void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix; Functor = Eigen::internal::assign_op; typename SrcXprType::Scalar = double; typename DstXprType::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::SparseMatrix; Src = Eigen::SparseMatrix; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:842:27: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:709:13: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenWrap.h:387:24: required from ‘Eigen::SparseMatrix Rcpp::traits::Exporter >::get() [with T = double]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/as.h:89:32: required from ‘T Rcpp::internal::as(SEXP, Rcpp::traits::r_type_generic_tag) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/as.h:152:31: required from ‘T Rcpp::as(SEXP) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/InputParameter.h:34:43: required from ‘Rcpp::InputParameter::operator T() [with T = Eigen::SparseMatrix]’ RcppExports.cpp:20:55: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:35: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenWrap.h:80:47: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenWrap.h:110:39: required from ‘SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/internal/wrap.h:776:49: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/internal/wrap.h:787:39: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/internal/wrap.h:807:52: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/internal/wrap_end.h:30:38: required from ‘SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ RcppExports.cpp:32:33: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.18/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.18/RcppEigen/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c data_manipulation.cpp -o data_manipulation.o In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:397, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 60 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 61 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 62 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 161 | template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 162 | template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 163 | template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 718 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 741 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 764 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 778 | ptranspose(PacketBlock& kernel) { | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 783 | ptranspose(PacketBlock& kernel) { | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 790 | ptranspose(PacketBlock& kernel) { | ^ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:377, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/SparseCore:37, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Sparse:26, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:29, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) long long int>::half’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/SparseCore:37, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Sparse:26, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:29, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase > >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:22:9: required from ‘class Eigen::internal::SparseTransposeImpl, 1024>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:45:37: required from ‘class Eigen::TransposeImpl, Eigen::Sparse>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ data_manipulation.cpp:27:22: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ data_manipulation.cpp:33:26: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ data_manipulation.cpp:33:26: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/SparseCore:37, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Sparse:26, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:29, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ data_manipulation.cpp:83:80: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from ‘struct Eigen::internal::evaluator > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8: required from ‘struct Eigen::internal::evaluator >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:58:63: required from ‘struct Eigen::internal::unary_evaluator >, Eigen::internal::IteratorBased, double>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1067:93: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Transpose >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ data_manipulation.cpp:27:23: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1084:12: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Transpose >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ data_manipulation.cpp:27:23: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:29: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ data_manipulation.cpp:93:37: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:327:30: required from ‘Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::DenseBase::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:501:10: required from ‘Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1084:73: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Transpose >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ data_manipulation.cpp:27:23: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from ‘struct Eigen::internal::evaluator > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8: required from ‘struct Eigen::internal::evaluator >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1067:93: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::SparseMatrix; _Scalar = double; int _Options = 0; _StorageIndex = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:949:7: required from ‘void Eigen::internal::set_from_triplets(const InputIterator&, const InputIterator&, SparseMatrixType&, DupFunctor) [with InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; SparseMatrixType = Eigen::SparseMatrix; DupFunctor = Eigen::internal::scalar_sum_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:996:92: required from ‘void Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::setFromTriplets(const InputIterators&, const InputIterators&) [with InputIterators = __gnu_cxx::__normal_iterator*, std::vector > >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ data_manipulation.cpp:111:31: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:35: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ data_manipulation.cpp:93:37: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ gcc -I"/usr/share/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.18/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.18/RcppEigen/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c valid_pointer.c -o valid_pointer.o g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -o SeuratObject.so RcppExports.o data_manipulation.o valid_pointer.o -L/usr/lib/R/lib -lR installing to /home/omnipath/local/R/4.3-3.18/00LOCK-SeuratObject/00new/SeuratObject/libs ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SeuratObject) * installing *source* package ‘Seurat’ ... ** package ‘Seurat’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ using C++17 g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.18/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.18/RcppEigen/include' -I'/home/omnipath/local/R/4.3-3.18/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ModularityOptimizer.cpp -o ModularityOptimizer.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.18/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.18/RcppEigen/include' -I'/home/omnipath/local/R/4.3-3.18/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c RModularityOptimizer.cpp -o RModularityOptimizer.o In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:397, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RModularityOptimizer.cpp:9: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 60 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 61 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 62 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 161 | template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 162 | template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 163 | template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 718 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 741 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 764 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 778 | ptranspose(PacketBlock& kernel) { | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 783 | ptranspose(PacketBlock& kernel) { | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 790 | ptranspose(PacketBlock& kernel) { | ^ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:377, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RModularityOptimizer.cpp:9: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RModularityOptimizer.cpp:9: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RModularityOptimizer.cpp:9: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RModularityOptimizer.cpp:9: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RModularityOptimizer.cpp:9: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/SparseCore:37, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Sparse:26, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:29, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RModularityOptimizer.cpp:9: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RModularityOptimizer.cpp:9: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) long long int>::half’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RModularityOptimizer.cpp:9: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:29: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ RModularityOptimizer.cpp:65:37: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:35: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ RModularityOptimizer.cpp:65:37: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.18/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.18/RcppEigen/include' -I'/home/omnipath/local/R/4.3-3.18/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c RcppExports.cpp -o RcppExports.o In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:397, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 60 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 61 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 62 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 161 | template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 162 | template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 163 | template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 718 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 741 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 764 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 778 | ptranspose(PacketBlock& kernel) { | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 783 | ptranspose(PacketBlock& kernel) { | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 790 | ptranspose(PacketBlock& kernel) { | ^ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:377, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/SparseCore:37, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Sparse:26, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:29, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) long long int>::half’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/SparseCore:37, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Sparse:26, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:29, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ RcppExports.cpp:71:105: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Map.h:18:8: required from ‘struct Eigen::internal::traits > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from ‘struct Eigen::internal::accessors_level > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:109:75: required from ‘class Eigen::Map >’ RcppExports.cpp:94:67: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Map.h:24:49: required from ‘struct Eigen::internal::traits > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from ‘struct Eigen::internal::accessors_level > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:109:75: required from ‘class Eigen::Map >’ RcppExports.cpp:94:67: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, 0>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: required from ‘class Eigen::MapBase >, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map >’ RcppExports.cpp:94:67: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ RcppExports.cpp:169:45: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenWrap.h:110:39: required from ‘SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/internal/wrap.h:776:49: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/internal/wrap.h:787:39: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/internal/wrap.h:807:52: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/internal/wrap_end.h:30:38: required from ‘SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ RcppExports.cpp:43:33: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from ‘struct Eigen::internal::evaluator > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8: required from ‘struct Eigen::internal::evaluator >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:77:20: required from ‘void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix; Functor = Eigen::internal::assign_op; typename SrcXprType::Scalar = double; typename DstXprType::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::SparseMatrix; Src = Eigen::SparseMatrix; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:842:27: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:709:13: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenWrap.h:387:24: required from ‘Eigen::SparseMatrix Rcpp::traits::Exporter >::get() [with T = double]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/as.h:89:32: required from ‘T Rcpp::internal::as(SEXP, Rcpp::traits::r_type_generic_tag) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/as.h:152:31: required from ‘T Rcpp::as(SEXP) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/InputParameter.h:34:43: required from ‘Rcpp::InputParameter::operator T() [with T = Eigen::SparseMatrix]’ RcppExports.cpp:29:60: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from ‘struct Eigen::internal::evaluator > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8: required from ‘struct Eigen::internal::evaluator >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:77:20: required from ‘void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix; Functor = Eigen::internal::assign_op; typename SrcXprType::Scalar = double; typename DstXprType::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::SparseMatrix; Src = Eigen::SparseMatrix; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:842:27: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:709:13: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 1; _StorageIndex = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenWrap.h:412:24: required from ‘Eigen::SparseMatrix<_Scalar, 1> Rcpp::traits::Exporter >::get() [with T = double]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/as.h:89:32: required from ‘T Rcpp::internal::as(SEXP, Rcpp::traits::r_type_generic_tag) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/as.h:152:31: required from ‘T Rcpp::as(SEXP) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/InputParameter.h:34:43: required from ‘Rcpp::InputParameter::operator T() [with T = Eigen::SparseMatrix]’ RcppExports.cpp:71:50: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:35: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenWrap.h:80:47: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenWrap.h:110:39: required from ‘SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/internal/wrap.h:776:49: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/internal/wrap.h:787:39: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/internal/wrap.h:807:52: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /home/omnipath/local/R/4.3-3.18/Rcpp/include/Rcpp/internal/wrap_end.h:30:38: required from ‘SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ RcppExports.cpp:43:33: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.18/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.18/RcppEigen/include' -I'/home/omnipath/local/R/4.3-3.18/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c data_manipulation.cpp -o data_manipulation.o In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:397, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 60 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 61 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 62 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 161 | template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 162 | template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 163 | template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 718 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 741 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 764 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 778 | ptranspose(PacketBlock& kernel) { | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 783 | ptranspose(PacketBlock& kernel) { | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 790 | ptranspose(PacketBlock& kernel) { | ^ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:377, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/SparseCore:37, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Sparse:26, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:29, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) long long int>::half’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ data_manipulation.cpp:18:21: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ data_manipulation.cpp:18:21: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/SparseCore:37, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Sparse:26, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:29, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase > >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:22:9: required from ‘class Eigen::internal::SparseTransposeImpl, 1024>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:45:37: required from ‘class Eigen::TransposeImpl, Eigen::Sparse>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ data_manipulation.cpp:18:45: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ data_manipulation.cpp:18:71: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0>, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Product.h:115:7: required from ‘class Eigen::internal::dense_product_base >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0, 7>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Product.h:147:7: required from ‘class Eigen::ProductImpl >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0>’ data_manipulation.cpp:18:83: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/SparseCore:37, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Sparse:26, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:29, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ data_manipulation.cpp:75:127: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Map.h:24:49: required from ‘struct Eigen::internal::traits > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from ‘struct Eigen::internal::accessors_level > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:109:75: required from ‘class Eigen::Map >’ data_manipulation.cpp:131:88: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, 0>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: required from ‘class Eigen::MapBase >, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map >’ data_manipulation.cpp:131:88: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from ‘class Eigen::Array’ data_manipulation.cpp:136:20: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, -1, 1, true> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, -1, 1, true> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, -1, 1, true>, 0>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: required from ‘class Eigen::MapBase >, -1, 1, true>, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense >, -1, 1, true, true>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl >, -1, 1, true, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block >, -1, 1, true>’ data_manipulation.cpp:136:31: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, 1, true> >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, -1, 1, true> >, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, -1, 1, true> >, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, -1, 1, true> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase >, -1, 1, true> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper >, -1, 1, true> >’ data_manipulation.cpp:136:40: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, const Eigen::Array >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ data_manipulation.cpp:138:32: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ data_manipulation.cpp:138:32: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ data_manipulation.cpp:138:47: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/SparseCore:37, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Sparse:26, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:29, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase, -1, 1, true> >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase, -1, 1, true> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:96:7: required from ‘class Eigen::internal::sparse_matrix_block_impl, -1, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:287:7: required from ‘class Eigen::BlockImpl, -1, 1, true, Eigen::Sparse>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, 1, true>’ data_manipulation.cpp:186:50: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, 0>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: required from ‘class Eigen::MapBase, -1, 1, true>, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, true, true>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, -1, 1, true, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, 1, true>’ data_manipulation.cpp:187:19: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper >’ data_manipulation.cpp:187:35: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ data_manipulation.cpp:187:40: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ data_manipulation.cpp:187:51: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ data_manipulation.cpp:194:30: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::internal::member_mean, 0>, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::internal::member_mean, 0> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::internal::member_mean, 0> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:56:7: required from ‘class Eigen::PartialReduxExpr, Eigen::internal::member_mean, 0>’ data_manipulation.cpp:229:45: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::internal::member_mean, 0>, -1, 1>, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::internal::member_mean, 0>, -1, 1> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::internal::member_mean, 0>, -1, 1> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Replicate.h:61:65: required from ‘class Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1>, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >’ data_manipulation.cpp:229:46: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1>, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >’ data_manipulation.cpp:229:46: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase >, 2>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ data_manipulation.cpp:231:37: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, Eigen::Matrix, 0>, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, Eigen::Matrix, 0> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, Eigen::Matrix, 0> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Product.h:115:7: required from ‘class Eigen::internal::dense_product_base >, Eigen::Matrix, 0, 8>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Product.h:147:7: required from ‘class Eigen::ProductImpl >, Eigen::Matrix, 0, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product >, Eigen::Matrix, 0>’ data_manipulation.cpp:231:42: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, const Eigen::Matrix >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >’ data_manipulation.cpp:231:70: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >’ data_manipulation.cpp:231:70: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 1, -1, false>, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1, -1, false>, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 1, -1, false>, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 1, -1, false> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, 1, -1, false> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, 1, -1, false>, 0>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: required from ‘class Eigen::MapBase >, 1, -1, false>, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense >, 1, -1, false, true>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl >, 1, -1, false, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block >, 1, -1, false>’ data_manipulation.cpp:368:29: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 1, -1, false> >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1, -1, false> >, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 1, -1, false> >, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 1, -1, false> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase >, 1, -1, false> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper >, 1, -1, false> >’ data_manipulation.cpp:368:38: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:29: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ data_manipulation.cpp:95:36: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from ‘struct Eigen::internal::evaluator > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8: required from ‘struct Eigen::internal::evaluator >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:58:63: required from ‘struct Eigen::internal::unary_evaluator >, Eigen::internal::IteratorBased, double>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1067:93: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Transpose >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ data_manipulation.cpp:150:23: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1084:12: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Transpose >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ data_manipulation.cpp:150:23: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, 0>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: required from ‘class Eigen::MapBase, -1, -1, false>, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, false, true>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, -1, -1, false, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, -1, false>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CommaInitializer.h:95:21: required from ‘Eigen::CommaInitializer& Eigen::CommaInitializer::operator,(const Eigen::DenseBase&) [with OtherDerived = Eigen::Matrix; XprType = Eigen::Matrix]’ data_manipulation.cpp:249:17: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from ‘struct Eigen::internal::evaluator > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8: required from ‘struct Eigen::internal::evaluator >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1067:93: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::SparseMatrix; _Scalar = double; int _Options = 0; _StorageIndex = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:949:7: required from ‘void Eigen::internal::set_from_triplets(const InputIterator&, const InputIterator&, SparseMatrixType&, DupFunctor) [with InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; SparseMatrixType = Eigen::SparseMatrix; DupFunctor = Eigen::internal::scalar_sum_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:996:92: required from ‘void Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::setFromTriplets(const InputIterators&, const InputIterators&) [with InputIterators = __gnu_cxx::__normal_iterator*, std::vector > >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ data_manipulation.cpp:110:31: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:327:30: required from ‘Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::DenseBase::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:501:10: required from ‘Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1084:73: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Transpose >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ data_manipulation.cpp:150:23: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/SparseCore:37, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Sparse:26, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:29, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase, 0, Eigen::OuterStride<> > >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase, 0, Eigen::OuterStride<> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:50:7: required from ‘class Eigen::SparseMapBase, 0, Eigen::OuterStride<> >, 0>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:83:34: required from ‘class Eigen::internal::SparseRefBase, 0, Eigen::OuterStride<> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:177:7: required from ‘class Eigen::Ref, 0, Eigen::OuterStride<> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:128:88: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Block, -1, 1, true>; SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; Eigen::internal::sparse_matrix_block_impl::BlockType = Eigen::Block, -1, 1, true>]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:216:34: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const BlockType&) [with SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; Eigen::internal::sparse_matrix_block_impl::BlockType = Eigen::Block, -1, 1, true>]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:111:5: required from ‘Eigen::Block& Eigen::Block::operator=(const Eigen::Block&) [with XprType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; bool InnerPanel = true]’ data_manipulation.cpp:409:42: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from ‘class Eigen::Array’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:70:30: required from ‘class Eigen::SparseMapBase, 0, Eigen::OuterStride<> >, 0>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:83:34: required from ‘class Eigen::internal::SparseRefBase, 0, Eigen::OuterStride<> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:177:7: required from ‘class Eigen::Ref, 0, Eigen::OuterStride<> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:128:88: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Block, -1, 1, true>; SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; Eigen::internal::sparse_matrix_block_impl::BlockType = Eigen::Block, -1, 1, true>]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:216:34: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const BlockType&) [with SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; Eigen::internal::sparse_matrix_block_impl::BlockType = Eigen::Block, -1, 1, true>]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:111:5: required from ‘Eigen::Block& Eigen::Block::operator=(const Eigen::Block&) [with XprType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; bool InnerPanel = true]’ data_manipulation.cpp:409:42: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) long long int>::half’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Array.h:45:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:83:34: required from ‘class Eigen::internal::SparseRefBase, 0, Eigen::OuterStride<> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:177:7: required from ‘class Eigen::Ref, 0, Eigen::OuterStride<> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:128:88: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Block, -1, 1, true>; SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; Eigen::internal::sparse_matrix_block_impl::BlockType = Eigen::Block, -1, 1, true>]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:216:34: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const BlockType&) [with SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; Eigen::internal::sparse_matrix_block_impl::BlockType = Eigen::Block, -1, 1, true>]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:111:5: required from ‘Eigen::Block& Eigen::Block::operator=(const Eigen::Block&) [with XprType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; bool InnerPanel = true]’ data_manipulation.cpp:409:42: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/SparseCore:37, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Sparse:26, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:29, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase, 0, Eigen::OuterStride<> >, -1, 1, true> >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:17:7: required from ‘class Eigen::BlockImpl, 0, Eigen::OuterStride<> >, -1, 1, true, Eigen::Sparse>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:194:85: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Block, -1, 1, true>; SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; Eigen::internal::sparse_matrix_block_impl::BlockType = Eigen::Block, -1, 1, true>]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:216:34: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const BlockType&) [with SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; Eigen::internal::sparse_matrix_block_impl::BlockType = Eigen::Block, -1, 1, true>]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:111:5: required from ‘Eigen::Block& Eigen::Block::operator=(const Eigen::Block&) [with XprType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; bool InnerPanel = true]’ data_manipulation.cpp:409:42: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Array; Eigen::Index = long int]’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator >; Eigen::internal::redux_impl::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Array; typename Eigen::internal::traits::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:468:32: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::mean() const [with Derived = Eigen::Array; typename Eigen::internal::traits::Scalar = double]’ data_manipulation.cpp:137:28: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; Eigen::Index = long int]’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >; Eigen::internal::redux_impl::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; typename Eigen::internal::traits::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; typename Eigen::internal::traits::Scalar = double]’ data_manipulation.cpp:138:53: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:829:17: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array; Src = Eigen::ArrayWrapper >, 1, -1, false> >; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::ArrayWrapper >, 1, -1, false> >; Derived = Eigen::Array]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::ArrayWrapper >, 1, -1, false> >; Derived = Eigen::Array]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Array.h:242:29: required from ‘Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase&, typename Eigen::internal::enable_if >::Scalar>::value, Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::PrivateType>::type) [with OtherDerived = Eigen::ArrayWrapper >, 1, -1, false> >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if >::Scalar>::value, Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::PrivateType>::type = Eigen::Array::PrivateType; typename Eigen::internal::traits >::Scalar = double; typename OtherDerived::Scalar = double]’ data_manipulation.cpp:368:39: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> > > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:364:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:45:21: required from ‘Eigen::Index Eigen::BlockImpl::nonZeros() const [with XprType = Eigen::Ref, 0, Eigen::OuterStride<> >; int BlockRows = -1; int BlockCols = 1; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:194:97: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Block, -1, 1, true>; SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; Eigen::internal::sparse_matrix_block_impl::BlockType = Eigen::Block, -1, 1, true>]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:216:34: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const BlockType&) [with SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; Eigen::internal::sparse_matrix_block_impl::BlockType = Eigen::Block, -1, 1, true>]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:111:5: required from ‘Eigen::Block& Eigen::Block::operator=(const Eigen::Block&) [with XprType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; bool InnerPanel = true]’ data_manipulation.cpp:409:42: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:35: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ data_manipulation.cpp:95:36: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:445, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, -1, 1, true> >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1338:41: required from ‘struct Eigen::internal::evaluator_wrapper_base >, -1, 1, true> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1416:8: required from ‘struct Eigen::internal::unary_evaluator >, -1, 1, true> >, Eigen::internal::IndexBased, double>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator >, -1, 1, true> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:730:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Array; SrcXprType = Eigen::ArrayWrapper >, -1, 1, true> >; Functor = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Array; SrcXprType = Eigen::ArrayWrapper >, -1, 1, true> >; Functor = Eigen::internal::assign_op; Weak = void]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array; Src = Eigen::ArrayWrapper >, -1, 1, true> >; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::ArrayWrapper >, -1, 1, true> >; Derived = Eigen::Array]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::ArrayWrapper >, -1, 1, true> >; Derived = Eigen::Array]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Array.h:242:29: required from ‘Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase&, typename Eigen::internal::enable_if >::Scalar>::value, Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::PrivateType>::type) [with OtherDerived = Eigen::ArrayWrapper >, -1, 1, true> >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if >::Scalar>::value, Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::PrivateType>::type = Eigen::Array::PrivateType; typename Eigen::internal::traits >::Scalar = double; typename OtherDerived::Scalar = double]’ data_manipulation.cpp:136:41: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 989 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true> >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:736:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >; Functor = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >; Functor = Eigen::internal::assign_op; Weak = void]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, 1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*; typename Eigen::internal::evaluator_traits::Shape = Eigen::DenseShape]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block, -1, 1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Assign.h:66:28: required from ‘Derived& Eigen::MatrixBase::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >; Derived = Eigen::Block, -1, 1, true>]’ data_manipulation.cpp:187:51: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, 1, -1, false> >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1338:41: required from ‘struct Eigen::internal::evaluator_wrapper_base >, 1, -1, false> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1416:8: required from ‘struct Eigen::internal::unary_evaluator >, 1, -1, false> >, Eigen::internal::IndexBased, double>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator >, 1, -1, false> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:730:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Transpose >; SrcXprType = Eigen::ArrayWrapper >, 1, -1, false> >; Functor = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Transpose >; SrcXprType = Eigen::ArrayWrapper >, 1, -1, false> >; Functor = Eigen::internal::assign_op; Weak = void]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array; Src = Eigen::ArrayWrapper >, 1, -1, false> >; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::ArrayWrapper >, 1, -1, false> >; Derived = Eigen::Array]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::ArrayWrapper >, 1, -1, false> >; Derived = Eigen::Array]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Array.h:242:29: required from ‘Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase&, typename Eigen::internal::enable_if >::Scalar>::value, Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::PrivateType>::type) [with OtherDerived = Eigen::ArrayWrapper >, 1, -1, false> >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if >::Scalar>::value, Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::PrivateType>::type = Eigen::Array::PrivateType; typename Eigen::internal::traits >::Scalar = double; typename OtherDerived::Scalar = double]’ data_manipulation.cpp:368:39: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from ‘struct Eigen::internal::evaluator, -1, 1, true> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:581:8: required from ‘struct Eigen::internal::unary_evaluator, -1, 1, true>, Eigen::internal::IteratorBased, double>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1004:8: required from ‘struct Eigen::internal::block_evaluator, -1, 1, true, false>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:952:8: required from ‘struct Eigen::internal::evaluator, -1, 1, true> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:683:97: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Block, -1, 1, true>; _Scalar = double; int _Options = 0; _StorageIndex = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:217:9: required from ‘void Eigen::Ref, _Options, _StrideType>::construct(const Expression&, Eigen::internal::true_type) [with Expression = Eigen::Block, -1, 1, true>; MatScalar = double; int MatOptions = 0; MatIndex = int; int Options = 0; StrideType = Eigen::OuterStride<>]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:190:16: required from ‘Eigen::Ref, _Options, _StrideType>::Ref(const Eigen::SparseMatrixBase&) [with Derived = Eigen::Block, -1, 1, true>; MatScalar = double; int MatOptions = 0; MatIndex = int; int Options = 0; StrideType = Eigen::OuterStride<>]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:128:88: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Block, -1, 1, true>; SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; Eigen::internal::sparse_matrix_block_impl::BlockType = Eigen::Block, -1, 1, true>]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:216:34: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const BlockType&) [with SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; Eigen::internal::sparse_matrix_block_impl::BlockType = Eigen::Block, -1, 1, true>]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:111:5: required from ‘Eigen::Block& Eigen::Block::operator=(const Eigen::Block&) [with XprType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; bool InnerPanel = true]’ data_manipulation.cpp:409:42: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:445, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true> >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:683:97: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Block, -1, 1, true>; _Scalar = double; int _Options = 0; _StorageIndex = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:217:9: required from ‘void Eigen::Ref, _Options, _StrideType>::construct(const Expression&, Eigen::internal::true_type) [with Expression = Eigen::Block, -1, 1, true>; MatScalar = double; int MatOptions = 0; MatIndex = int; int Options = 0; StrideType = Eigen::OuterStride<>]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:190:16: required from ‘Eigen::Ref, _Options, _StrideType>::Ref(const Eigen::SparseMatrixBase&) [with Derived = Eigen::Block, -1, 1, true>; MatScalar = double; int MatOptions = 0; MatIndex = int; int Options = 0; StrideType = Eigen::OuterStride<>]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:128:88: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Block, -1, 1, true>; SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; Eigen::internal::sparse_matrix_block_impl::BlockType = Eigen::Block, -1, 1, true>]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:216:34: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const BlockType&) [with SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; Eigen::internal::sparse_matrix_block_impl::BlockType = Eigen::Block, -1, 1, true>]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:111:5: required from ‘Eigen::Block& Eigen::Block::operator=(const Eigen::Block&) [with XprType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; bool InnerPanel = true]’ data_manipulation.cpp:409:42: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 989 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:131:44: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*; typename Eigen::internal::evaluator_traits::Shape = Eigen::DenseShape]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from ‘Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:229:46: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:445, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false> >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:736:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Matrix; Functor = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Matrix; Functor = Eigen::internal::assign_op; Weak = void]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Matrix; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Matrix; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*; typename Eigen::internal::evaluator_traits::Shape = Eigen::DenseShape]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Assign.h:66:28: required from ‘Derived& Eigen::MatrixBase::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Matrix; Derived = Eigen::Block, -1, -1, false>]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CommaInitializer.h:95:64: required from ‘Eigen::CommaInitializer& Eigen::CommaInitializer::operator,(const Eigen::DenseBase&) [with OtherDerived = Eigen::Matrix; XprType = Eigen::Matrix]’ data_manipulation.cpp:249:17: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 989 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, Eigen::Matrix, 1>, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, Eigen::Matrix, 1> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, Eigen::Matrix, 1> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Product.h:115:7: required from ‘class Eigen::internal::dense_product_base >, Eigen::Matrix, 1, 8>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Product.h:147:7: required from ‘class Eigen::ProductImpl >, Eigen::Matrix, 1, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product >, Eigen::Matrix, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:436:50: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:231:70: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:327:30: required from ‘Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Matrix; Eigen::DenseBase::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:501:10: required from ‘Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:436:18: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:231:70: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:496, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘class Eigen::internal::gebp_traits’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:106:40: required from ‘void Eigen::internal::evaluateProductBlockingSizesHeuristic(Index&, Index&, Index&, Index) [with LhsScalar = double; RhsScalar = double; int KcFactor = 1; Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:301:81: required from ‘void Eigen::internal::computeProductBlockingSizes(Index&, Index&, Index&, Index) [with LhsScalar = double; RhsScalar = double; int KcFactor = 1; Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:353:66: required from ‘Eigen::internal::gemm_blocking_space::gemm_blocking_space(Eigen::Index, Eigen::Index, Eigen::Index, Eigen::Index, bool) [with int StorageOrder = 0; _LhsScalar = double; _RhsScalar = double; int MaxRows = -1; int MaxCols = -1; int MaxDepth = -1; int KcFactor = 1; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:485:18: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Eigen::internal::generic_product_impl::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:437:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:231:70: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:391:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 391 | typedef typename conditional::type LhsPacket; | ^~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:392:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 392 | typedef typename conditional::type RhsPacket; | ^~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:393:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 393 | typedef typename conditional::type ResPacket; | ^~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gemm_pack_lhs::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::const_blas_data_mapper; int Pack1 = 4; int Pack2 = 2; bool Conjugate = false; bool PanelMode = false]’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:182:17: required from ‘static void Eigen::internal::general_matrix_matrix_product::run(Index, Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::general_matrix_matrix_product::ResScalar*, Index, Index, Eigen::internal::general_matrix_matrix_product::ResScalar, Eigen::internal::level3_blocking&, Eigen::internal::GemmParallelInfo*) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; Eigen::internal::general_matrix_matrix_product::ResScalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:228:14: required from ‘void Eigen::internal::gemm_functor::operator()(Index, Index, Index, Index, Eigen::internal::GemmParallelInfo*) const [with Scalar = double; Index = long int; Gemm = Eigen::internal::general_matrix_matrix_product; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Dest = Eigen::Matrix; BlockingType = Eigen::internal::gemm_blocking_space<0, double, double, -1, -1, -1, 1, false>]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/Parallelizer.h:98:7: required from ‘void Eigen::internal::parallelize_gemm(const Functor&, Index, Index, Index, bool) [with bool Condition = true; Functor = Eigen::internal::gemm_functor, Eigen::Transpose >, Eigen::Matrix, Eigen::Matrix, Eigen::internal::gemm_blocking_space<0, double, double, -1, -1, -1, 1, false> >; Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:487:9: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Eigen::internal::generic_product_impl::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:437:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:231:70: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1847:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1847 | PacketBlock kernel; | ^~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1847:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gemm_pack_rhs::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::const_blas_data_mapper; int nr = 4; bool Conjugate = false; bool PanelMode = false]’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:193:21: required from ‘static void Eigen::internal::general_matrix_matrix_product::run(Index, Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::general_matrix_matrix_product::ResScalar*, Index, Index, Eigen::internal::general_matrix_matrix_product::ResScalar, Eigen::internal::level3_blocking&, Eigen::internal::GemmParallelInfo*) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; Eigen::internal::general_matrix_matrix_product::ResScalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:228:14: required from ‘void Eigen::internal::gemm_functor::operator()(Index, Index, Index, Index, Eigen::internal::GemmParallelInfo*) const [with Scalar = double; Index = long int; Gemm = Eigen::internal::general_matrix_matrix_product; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Dest = Eigen::Matrix; BlockingType = Eigen::internal::gemm_blocking_space<0, double, double, -1, -1, -1, 1, false>]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/Parallelizer.h:98:7: required from ‘void Eigen::internal::parallelize_gemm(const Functor&, Index, Index, Index, bool) [with bool Condition = true; Functor = Eigen::internal::gemm_functor, Eigen::Transpose >, Eigen::Matrix, Eigen::Matrix, Eigen::internal::gemm_blocking_space<0, double, double, -1, -1, -1, 1, false> >; Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:487:9: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Eigen::internal::generic_product_impl::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:437:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:231:70: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1981:62: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1981 | PacketBlock kernel; | ^~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gebp_kernel::operator()(const DataMapper&, const LhsScalar*, const RhsScalar*, Index, Index, Index, Eigen::internal::gebp_kernel::ResScalar, Index, Index, Index, Index) [with LhsScalar = double; RhsScalar = double; Index = long int; DataMapper = Eigen::internal::blas_data_mapper; int mr = 4; int nr = 4; bool ConjugateLhs = false; bool ConjugateRhs = false; Eigen::internal::gebp_kernel::ResScalar = double]’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:196:15: required from ‘static void Eigen::internal::general_matrix_matrix_product::run(Index, Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::general_matrix_matrix_product::ResScalar*, Index, Index, Eigen::internal::general_matrix_matrix_product::ResScalar, Eigen::internal::level3_blocking&, Eigen::internal::GemmParallelInfo*) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; Eigen::internal::general_matrix_matrix_product::ResScalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:228:14: required from ‘void Eigen::internal::gemm_functor::operator()(Index, Index, Index, Index, Eigen::internal::GemmParallelInfo*) const [with Scalar = double; Index = long int; Gemm = Eigen::internal::general_matrix_matrix_product; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Dest = Eigen::Matrix; BlockingType = Eigen::internal::gemm_blocking_space<0, double, double, -1, -1, -1, 1, false>]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/Parallelizer.h:98:7: required from ‘void Eigen::internal::parallelize_gemm(const Functor&, Index, Index, Index, bool) [with bool Condition = true; Functor = Eigen::internal::gemm_functor, Eigen::Transpose >, Eigen::Matrix, Eigen::Matrix, Eigen::internal::gemm_blocking_space<0, double, double, -1, -1, -1, 1, false> >; Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:487:9: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Eigen::internal::generic_product_impl::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:437:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:231:70: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1537:103: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1537 | const int SResPacketHalfSize = unpacket_traits::half>::size; | ^~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1592:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1592 | typedef typename conditional=8,typename unpacket_traits::half,SResPacket>::type SResPacketHalf; | ^~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1593:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1593 | typedef typename conditional=8,typename unpacket_traits::half,SLhsPacket>::type SLhsPacketHalf; | ^~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1594:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1594 | typedef typename conditional=8,typename unpacket_traits::half,SRhsPacket>::type SRhsPacketHalf; | ^~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1595:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1595 | typedef typename conditional=8,typename unpacket_traits::half,SAccPacket>::type SAccPacketHalf; | ^~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 1, -1, true>, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase >, 1, -1, true>, 2>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 1, -1, true> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, 1, -1, true> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, 1, -1, true>, 0>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense >, 1, -1, true, true>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:231:70: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 1, -1, true> >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase >, 1, -1, true> >, 2>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 1, -1, true> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, 1, -1, true> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from ‘class Eigen::TransposeImpl >, 1, -1, true>, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >, 1, -1, true> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:578:37: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:231:70: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 2>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, 0>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, true, true>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:231:70: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true>, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:578:52: required from ‘const CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int ProductTag = 8; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Matrix; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Transpose >; Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType = double; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:631:63: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:231:70: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 2>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, false>, 0>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 1, -1, false, true>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*; typename Eigen::internal::evaluator_traits::Shape = Eigen::DenseShape]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from ‘Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:229:46: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:445, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, 1, -1, true> >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from ‘struct Eigen::internal::evaluator >, 1, -1, true> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:270:41: required from ‘struct Eigen::internal::unary_evaluator >, 1, -1, true> >, Eigen::internal::IndexBased, double>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator >, 1, -1, true> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from ‘struct Eigen::internal::evaluator >, 1, -1, true> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:681:37: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:231:70: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 989 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true> >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from ‘struct Eigen::internal::evaluator, -1, 1, true> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:681:69: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:349:33: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:416:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:231:70: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, false> >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:349:33: required from ‘class Eigen::internal::redux_evaluator, 1, -1, false> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:416:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Block, 1, -1, false>; typename Eigen::internal::traits::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:468:32: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::mean() const [with Derived = Eigen::Block, 1, -1, false>; typename Eigen::internal::traits::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:105:1: required from ‘ResultType Eigen::internal::member_mean::operator()(const XprType&) const [with XprType = Eigen::Block, 1, -1, false>; ResultType = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1318:23: required from ‘const Scalar Eigen::internal::evaluator >::coeff(Eigen::Index) const [with ArgType = Eigen::Matrix; MemberOp = Eigen::internal::member_mean; int Direction = 0; Eigen::internal::evaluator >::Scalar = double; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:637:61: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*; typename Eigen::internal::evaluator_traits::Shape = Eigen::DenseShape]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from ‘Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:229:46: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; Eigen::Index = long int]’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >; Eigen::internal::redux_impl::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:578:75: required from ‘const CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int ProductTag = 8; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Matrix; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Transpose >; Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType = double; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:631:63: required from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator >; SrcEvaluatorTypeT = Eigen::internal::evaluator >, Eigen::Matrix, 1> >; Functor = Eigen::internal::assign_op; int Version = 0; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:645:16: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:231:70: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Block, -1, 1, true>; Eigen::Index = long int]’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, -1, 1, true> >; Eigen::internal::redux_impl::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Block, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:468:32: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::mean() const [with Derived = Eigen::Block, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:105:1: required from ‘ResultType Eigen::internal::member_mean::operator()(const XprType&) const [with XprType = Eigen::Block, -1, 1, true>; ResultType = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1316:23: required from ‘const Scalar Eigen::internal::evaluator >::coeff(Eigen::Index) const [with ArgType = Eigen::Matrix; MemberOp = Eigen::internal::member_mean; int Direction = 0; Eigen::internal::evaluator >::Scalar = double; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:637:61: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*; typename Eigen::internal::evaluator_traits::Shape = Eigen::DenseShape]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from ‘Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:229:46: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.18/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.18/RcppEigen/include' -I'/home/omnipath/local/R/4.3-3.18/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fast_NN_dist.cpp -o fast_NN_dist.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.18/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.18/RcppEigen/include' -I'/home/omnipath/local/R/4.3-3.18/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c integration.cpp -o integration.o In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:397, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from integration.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 60 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 61 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 62 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 161 | template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 162 | template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 163 | template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 718 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 741 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 764 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 778 | ptranspose(PacketBlock& kernel) { | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 783 | ptranspose(PacketBlock& kernel) { | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 790 | ptranspose(PacketBlock& kernel) { | ^ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:377, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from integration.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from integration.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from integration.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from integration.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from integration.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/SparseCore:37, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Sparse:26, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:29, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from integration.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from integration.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) long long int>::half’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from integration.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from integration.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ integration.cpp:23:1: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from integration.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ integration.cpp:23:1: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ integration.cpp:23:1: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, false>, 0>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: required from ‘class Eigen::MapBase, 1, -1, false>, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 1, -1, false, true>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, 1, -1, false, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, 1, -1, false>’ integration.cpp:43:41: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/SparseCore:37, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Sparse:26, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:29, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from integration.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase > >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:22:9: required from ‘class Eigen::internal::SparseTransposeImpl, 1024>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:45:37: required from ‘class Eigen::TransposeImpl, Eigen::Sparse>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ integration.cpp:60:53: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from integration.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ integration.cpp:60:79: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0>, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Product.h:115:7: required from ‘class Eigen::internal::dense_product_base >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0, 7>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Product.h:147:7: required from ‘class Eigen::ProductImpl >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0>’ integration.cpp:60:99: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ integration.cpp:68:61: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::internal::member_sum, 0>, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::internal::member_sum, 0> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::internal::member_sum, 0> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:56:7: required from ‘class Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>’ integration.cpp:77:57: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/SparseCore:37, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Sparse:26, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:29, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from integration.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase > >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseView.h:45:7: required from ‘class Eigen::SparseView >’ integration.cpp:83:41: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >, Eigen::SparseMatrix, 2> >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Product.h:140:7: required from ‘class Eigen::ProductImpl >, Eigen::SparseMatrix, 2, Eigen::Sparse>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product >, Eigen::SparseMatrix, 2>’ integration.cpp:94:85: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase, const Eigen::SparseMatrix, const Eigen::Product >, Eigen::SparseMatrix, 2> > >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:36:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::SparseMatrix, const Eigen::Product >, Eigen::SparseMatrix, 2>, Eigen::Sparse>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::SparseMatrix, const Eigen::Product >, Eigen::SparseMatrix, 2> >’ integration.cpp:94:85: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from integration.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, 0>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: required from ‘class Eigen::MapBase, -1, 1, true>, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, true, true>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, -1, 1, true, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, 1, true>’ integration.cpp:140:36: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true>, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> >’ integration.cpp:140:60: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1084:12: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::SparseView >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ integration.cpp:83:42: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from ‘struct Eigen::internal::evaluator > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8: required from ‘struct Eigen::internal::evaluator >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from ‘struct Eigen::internal::evaluator >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:64:51: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::SparseMatrix, const Eigen::Product >, Eigen::SparseMatrix, 2> >, Eigen::internal::IteratorBased, Eigen::internal::IteratorBased, double, double>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8: required from ‘struct Eigen::internal::evaluator, const Eigen::SparseMatrix, const Eigen::Product >, Eigen::SparseMatrix, 2> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:683:97: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::SparseMatrix, const Eigen::Product >, Eigen::SparseMatrix, 2> >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ integration.cpp:94:85: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/SparseCore:37, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Sparse:26, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:29, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from integration.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:926:66: required from ‘void Eigen::internal::set_from_triplets(const InputIterator&, const InputIterator&, SparseMatrixType&, DupFunctor) [with InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; SparseMatrixType = Eigen::SparseMatrix; DupFunctor = FindWeightsC(Rcpp::NumericVector, Eigen::MatrixXd, std::vector >, std::vector >, Eigen::MatrixXd, Eigen::VectorXd, double, double, bool)::]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1012:103: required from ‘void Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::setFromTriplets(const InputIterators&, const InputIterators&, DupFunctor) [with InputIterators = __gnu_cxx::__normal_iterator*, std::vector > >; DupFunctor = FindWeightsC(Rcpp::NumericVector, Eigen::MatrixXd, std::vector >, std::vector >, Eigen::MatrixXd, Eigen::VectorXd, double, double, bool)::; _Scalar = double; int _Options = 0; _StorageIndex = int]’ integration.cpp:59:33: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from integration.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:29: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:163:21: required from ‘Eigen::SparseCompressedBase::InnerIterator::InnerIterator(const Eigen::SparseCompressedBase&, Eigen::Index) [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ integration.cpp:62:73: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> >, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Dot.h:98:40: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> >; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Dot.h:110:23: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::norm() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> >; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ integration.cpp:140:67: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from ‘struct Eigen::internal::evaluator > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8: required from ‘struct Eigen::internal::evaluator >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1067:93: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::SparseMatrix; _Scalar = double; int _Options = 0; _StorageIndex = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:949:7: required from ‘void Eigen::internal::set_from_triplets(const InputIterator&, const InputIterator&, SparseMatrixType&, DupFunctor) [with InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; SparseMatrixType = Eigen::SparseMatrix; DupFunctor = FindWeightsC(Rcpp::NumericVector, Eigen::MatrixXd, std::vector >, std::vector >, Eigen::MatrixXd, Eigen::VectorXd, double, double, bool)::]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1012:103: required from ‘void Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::setFromTriplets(const InputIterators&, const InputIterators&, DupFunctor) [with InputIterators = __gnu_cxx::__normal_iterator*, std::vector > >; DupFunctor = FindWeightsC(Rcpp::NumericVector, Eigen::MatrixXd, std::vector >, std::vector >, Eigen::MatrixXd, Eigen::VectorXd, double, double, bool)::; _Scalar = double; int _Options = 0; _StorageIndex = int]’ integration.cpp:59:33: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:327:30: required from ‘Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::DenseBase::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:501:10: required from ‘Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1084:73: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::SparseView >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ integration.cpp:83:42: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:829:17: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Block, 1, -1, false>; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Block, 1, -1, false>; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Block, 1, -1, false>; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Block, 1, -1, false>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ integration.cpp:43:46: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:445, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from integration.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true> >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from ‘struct Eigen::internal::evaluator, -1, 1, true> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:681:37: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:522:41: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:349:33: required from ‘class Eigen::internal::redux_evaluator, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:416:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >; typename Eigen::internal::traits::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >; typename Eigen::internal::traits::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Dot.h:98:46: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> >; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Dot.h:110:23: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::norm() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> >; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ integration.cpp:140:67: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 989 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, false> >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:730:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Transpose >; SrcXprType = Eigen::Block, 1, -1, false>; Functor = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Transpose >; SrcXprType = Eigen::Block, 1, -1, false>; Functor = Eigen::internal::assign_op; Weak = void]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Block, 1, -1, false>; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Block, 1, -1, false>; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Block, 1, -1, false>; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Block, 1, -1, false>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ integration.cpp:43:46: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from integration.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:35: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:163:21: required from ‘Eigen::SparseCompressedBase::InnerIterator::InnerIterator(const Eigen::SparseCompressedBase&, Eigen::Index) [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ integration.cpp:62:73: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >; Eigen::Index = long int]’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > > >; Eigen::internal::redux_impl::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >; typename Eigen::internal::traits::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >; typename Eigen::internal::traits::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Dot.h:98:46: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> >; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Dot.h:110:23: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::norm() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> >; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ integration.cpp:140:67: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 2>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, 0>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, true, true>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Transpose >; SrcXprType = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Functor = Eigen::internal::assign_op; Weak = void]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ integration.cpp:77:58: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 2>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, false>, 0>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 1, -1, false, true>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Transpose >; SrcXprType = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Functor = Eigen::internal::assign_op; Weak = void]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ integration.cpp:77:58: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:445, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from integration.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true> >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:349:33: required from ‘class Eigen::internal::redux_evaluator, -1, 1, true> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:416:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Block, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Block, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:104:1: required from ‘ResultType Eigen::internal::member_sum::operator()(const XprType&) const [with XprType = Eigen::Block, -1, 1, true>; ResultType = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1316:23: required from ‘const Scalar Eigen::internal::evaluator >::coeff(Eigen::Index) const [with ArgType = Eigen::Matrix; MemberOp = Eigen::internal::member_sum; int Direction = 0; Eigen::internal::evaluator >::Scalar = double; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:637:61: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Transpose >; SrcXprType = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Functor = Eigen::internal::assign_op; Weak = void]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ integration.cpp:77:58: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 989 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, false> >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:349:33: required from ‘class Eigen::internal::redux_evaluator, 1, -1, false> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:416:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Block, 1, -1, false>; typename Eigen::internal::traits::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Block, 1, -1, false>; typename Eigen::internal::traits::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:104:1: required from ‘ResultType Eigen::internal::member_sum::operator()(const XprType&) const [with XprType = Eigen::Block, 1, -1, false>; ResultType = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1318:23: required from ‘const Scalar Eigen::internal::evaluator >::coeff(Eigen::Index) const [with ArgType = Eigen::Matrix; MemberOp = Eigen::internal::member_sum; int Direction = 0; Eigen::internal::evaluator >::Scalar = double; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:637:61: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Transpose >; SrcXprType = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Functor = Eigen::internal::assign_op; Weak = void]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ integration.cpp:77:58: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from integration.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Block, -1, 1, true>; Eigen::Index = long int]’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, -1, 1, true> >; Eigen::internal::redux_impl::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Block, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Block, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:104:1: required from ‘ResultType Eigen::internal::member_sum::operator()(const XprType&) const [with XprType = Eigen::Block, -1, 1, true>; ResultType = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1316:23: required from ‘const Scalar Eigen::internal::evaluator >::coeff(Eigen::Index) const [with ArgType = Eigen::Matrix; MemberOp = Eigen::internal::member_sum; int Direction = 0; Eigen::internal::evaluator >::Scalar = double; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:637:61: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Transpose >; SrcXprType = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Functor = Eigen::internal::assign_op; Weak = void]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Func = Eigen::internal::assign_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Derived = Eigen::Matrix]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ integration.cpp:77:58: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.18/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.18/RcppEigen/include' -I'/home/omnipath/local/R/4.3-3.18/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c snn.cpp -o snn.o In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:397, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from snn.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 60 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 61 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 62 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 161 | template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 162 | template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 163 | template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 718 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 741 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 764 | struct palign_impl | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 778 | ptranspose(PacketBlock& kernel) { | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 783 | ptranspose(PacketBlock& kernel) { | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 790 | ptranspose(PacketBlock& kernel) { | ^ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:377, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from snn.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from snn.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from snn.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from snn.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from snn.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/SparseCore:37, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Sparse:26, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:29, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from snn.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from snn.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) long long int>::half’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from snn.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:370, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from snn.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ snn.cpp:16:79: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from snn.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ snn.cpp:16:79: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/SparseCore:37, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Sparse:26, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:29, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from snn.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase > >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:22:9: required from ‘class Eigen::internal::SparseTransposeImpl, 1024>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:45:37: required from ‘class Eigen::TransposeImpl, Eigen::Sparse>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ snn.cpp:27:29: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase, Eigen::Transpose >, 2> >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Product.h:140:7: required from ‘class Eigen::ProductImpl, Eigen::Transpose >, 2, Eigen::Sparse>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Transpose >, 2>’ snn.cpp:27:31: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from snn.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, false>, 0>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: required from ‘class Eigen::MapBase, 1, -1, false>, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 1, -1, false, true>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, 1, -1, false, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, 1, -1, false>’ snn.cpp:106:30: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false>, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> >’ snn.cpp:106:48: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from ‘struct Eigen::internal::evaluator > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8: required from ‘struct Eigen::internal::evaluator >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:96:8: required from ‘struct Eigen::internal::product_evaluator, Eigen::Transpose >, 2>, 8, Eigen::SparseShape, Eigen::SparseShape, double, double>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:29:8: required from ‘struct Eigen::internal::evaluator, Eigen::Transpose >, 2> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1067:93: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 2>; _Scalar = double; int _Options = 0; _StorageIndex = int]’ snn.cpp:27:31: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1084:12: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 2>; _Scalar = double; int _Options = 0; _StorageIndex = int]’ snn.cpp:27:31: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/SparseCore:37, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Sparse:26, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:29, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from snn.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:926:66: required from ‘void Eigen::internal::set_from_triplets(const InputIterator&, const InputIterator&, SparseMatrixType&, DupFunctor) [with InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; SparseMatrixType = Eigen::SparseMatrix; DupFunctor = Eigen::internal::scalar_sum_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:996:92: required from ‘void Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::setFromTriplets(const InputIterators&, const InputIterators&) [with InputIterators = __gnu_cxx::__normal_iterator*, std::vector > >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ snn.cpp:26:22: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from snn.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:29: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:163:21: required from ‘Eigen::SparseCompressedBase::InnerIterator::InnerIterator(const Eigen::SparseCompressedBase&, Eigen::Index) [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ snn.cpp:29:62: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> > >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> > > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> > > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> >, Eigen::Dense>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Dot.h:98:40: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> >; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Dot.h:110:23: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::norm() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> >; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ snn.cpp:106:55: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from ‘struct Eigen::internal::evaluator > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8: required from ‘struct Eigen::internal::evaluator >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1067:93: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::SparseMatrix; _Scalar = double; int _Options = 0; _StorageIndex = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:949:7: required from ‘void Eigen::internal::set_from_triplets(const InputIterator&, const InputIterator&, SparseMatrixType&, DupFunctor) [with InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; SparseMatrixType = Eigen::SparseMatrix; DupFunctor = Eigen::internal::scalar_sum_op]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:996:92: required from ‘void Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::setFromTriplets(const InputIterators&, const InputIterators&) [with InputIterators = __gnu_cxx::__normal_iterator*, std::vector > >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ snn.cpp:26:22: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:327:30: required from ‘Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::DenseBase::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:501:10: required from ‘Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1084:73: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 2>; _Scalar = double; int _Options = 0; _StorageIndex = int]’ snn.cpp:27:31: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:445, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from snn.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, false> >’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from ‘struct Eigen::internal::evaluator, 1, -1, false> >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:681:37: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:522:41: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:349:33: required from ‘class Eigen::internal::redux_evaluator, const Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> > > >’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:416:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> > >; typename Eigen::internal::traits::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> > >; typename Eigen::internal::traits::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Dot.h:98:46: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> >; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Dot.h:110:23: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::norm() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> >; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ snn.cpp:106:55: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 989 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ In file included from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Core:439, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/Dense:1, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigenForward.h:28, from /home/omnipath/local/R/4.3-3.18/RcppEigen/include/RcppEigen.h:25, from snn.cpp:1: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]’: /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:35: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:163:21: required from ‘Eigen::SparseCompressedBase::InnerIterator::InnerIterator(const Eigen::SparseCompressedBase&, Eigen::Index) [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ snn.cpp:29:62: required from here /home/omnipath/local/R/4.3-3.18/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.18/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.18/RcppEigen/include' -I'/home/omnipath/local/R/4.3-3.18/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stats.cpp -o stats.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/home/omnipath/local/R/4.3-3.18/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.18/RcppEigen/include' -I'/home/omnipath/local/R/4.3-3.18/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-MHXHhT/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c valid_pointer.c -o valid_pointer.o g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -o Seurat.so ModularityOptimizer.o RModularityOptimizer.o RcppExports.o data_manipulation.o fast_NN_dist.o integration.o snn.o stats.o valid_pointer.o -L/usr/lib/R/lib -lR installing to /home/omnipath/local/R/4.3-3.18/00LOCK-Seurat/00new/Seurat/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Seurat) The downloaded source packages are in ‘/tmp/RtmpBNjSQi/downloaded_packages’ 'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")' for details. Replacement repositories: CRAN: https://cloud.r-project.org Bioconductor version 3.18 (BiocManager 1.30.22), R 4.3.1 (2023-06-16) Old packages: 'scater' trying URL 'https://bioconductor.org/packages/3.18/bioc/src/contrib/scater_1.30.1.tar.gz' Content type 'application/x-gzip' length 4123647 bytes (3.9 MB) ================================================== downloaded 3.9 MB * installing *source* package ‘scater’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scater) The downloaded source packages are in ‘/tmp/RtmpBNjSQi/downloaded_packages’ 'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")' for details. Replacement repositories: CRAN: https://cloud.r-project.org Bioconductor version 3.18 (BiocManager 1.30.22), R 4.3.1 (2023-06-16) Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TRUE` to re-install: 'BiocCheck' [ Finished: 2023-11-18 11:56:09 CET ]