[ Started: 2023-12-15 11:51:14 CET ]
[ CARNIVAL v2.7.2 for BioC-3.18 from https://github.com/saezlab/CARNIVAL@master ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.3-3.18"
[3] "/home/omnipath/local/R/4.3"      "/usr/lib/R/library"             
trying URL 'https://cran.uni-muenster.de/src/contrib/timeDate_4032.109.tar.gz'
Content type 'application/x-gzip' length 352769 bytes (344 KB)
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downloaded 344 KB

* installing *source* package ‘timeDate’ ...
** package ‘timeDate’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘sample’ from package ‘base’ in package ‘timeDate’
Creating a generic function for ‘getDataPart’ from package ‘methods’ in package ‘timeDate’
Creating a generic function for ‘abline’ from package ‘graphics’ in package ‘timeDate’
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (timeDate)

The downloaded source packages are in
	‘/tmp/RtmpzTQmRL/downloaded_packages’
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.18 (BiocManager 1.30.22), R 4.3.1 (2023-06-16)
Old packages: 'cowplot', 'GenomeInfoDb', 'ggridges'
trying URL 'https://cloud.r-project.org/src/contrib/cowplot_1.1.2.tar.gz'
Content type 'application/x-gzip' length 1350042 bytes (1.3 MB)
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downloaded 1.3 MB

trying URL 'https://bioconductor.org/packages/3.18/bioc/src/contrib/GenomeInfoDb_1.38.2.tar.gz'
Content type 'application/x-gzip' length 3579485 bytes (3.4 MB)
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downloaded 3.4 MB

trying URL 'https://cloud.r-project.org/src/contrib/ggridges_0.5.5.tar.gz'
Content type 'application/x-gzip' length 2231186 bytes (2.1 MB)
==================================================
downloaded 2.1 MB

* installing *source* package ‘cowplot’ ...
** package ‘cowplot’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cowplot)
* installing *source* package ‘GenomeInfoDb’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GenomeInfoDb)
* installing *source* package ‘ggridges’ ...
** package ‘ggridges’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ggridges)

The downloaded source packages are in
	‘/tmp/RtmpzTQmRL/downloaded_packages’
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.18 (BiocManager 1.30.22), R 4.3.1 (2023-06-16)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

[ Finished: 2023-12-15 11:51:43 CET ]