[ Started: 2024-03-28 12:25:11 CET ] [ CARNIVAL v2.7.2 for BioC-3.19 from https://github.com/saezlab/CARNIVAL@master (2b8887a 2023-12-06 13:18:32) ] [1] "Libraries: " "/home/omnipath/local/R/4.4-3.19" [3] "/home/omnipath/local/R/4.4" "/opt/R-devel/lib/R/library" Bioconductor version 3.19 (BiocManager 1.30.22), R Under development (unstable) (2024-03-23 r86179) Old packages: 'GenomeInfoDbData' trying URL 'https://bioconductor.org/packages/3.19/data/annotation/src/contrib/GenomeInfoDbData_1.2.12.tar.gz' Content type 'application/x-gzip' length 12558310 bytes (12.0 MB) ================================================== downloaded 12.0 MB * installing *source* package ‘GenomeInfoDbData’ ... ** using staged installation ** data ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GenomeInfoDbData) The downloaded source packages are in ‘/tmp/Rtmpz5Ts89/downloaded_packages’ Bioconductor version 3.19 (BiocManager 1.30.22), R Under development (unstable) (2024-03-23 r86179) Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TRUE` to re-install: 'BiocCheck' Skipping 1 packages ahead of CRAN: BiocStyle [ Finished: 2024-03-28 12:25:19 CET ]