[ Started: 2024-05-07 15:18:02 CEST ] [ CARNIVAL v2.7.2 for BioC-3.19 from https://github.com/saezlab/CARNIVAL@master (2b8887a 2023-12-06 13:18:32) ] Hit:1 http://de.archive.ubuntu.com/ubuntu jammy InRelease Get:2 http://de.archive.ubuntu.com/ubuntu jammy-updates InRelease [119 kB] Get:3 http://security.ubuntu.com/ubuntu jammy-security InRelease [110 kB] Get:4 https://cloud.r-project.org/bin/linux/ubuntu jammy-cran40/ InRelease [3,626 B] Hit:5 http://de.archive.ubuntu.com/ubuntu jammy-backports InRelease Get:6 http://de.archive.ubuntu.com/ubuntu jammy-updates/main i386 Packages [620 kB] Get:7 http://de.archive.ubuntu.com/ubuntu jammy-updates/main amd64 Packages [1,617 kB] Get:8 http://security.ubuntu.com/ubuntu jammy-security/main i386 Packages [454 kB] Get:9 http://de.archive.ubuntu.com/ubuntu jammy-updates/main Translation-en [305 kB] Get:10 http://de.archive.ubuntu.com/ubuntu jammy-updates i386 Contents (deb) [49.2 MB] Get:11 http://security.ubuntu.com/ubuntu jammy-security/main amd64 Packages [1,400 kB] Get:12 http://security.ubuntu.com/ubuntu jammy-security/main Translation-en [244 kB] Get:13 http://security.ubuntu.com/ubuntu jammy-security i386 Contents (deb) [46.8 MB] Get:14 http://security.ubuntu.com/ubuntu jammy-security amd64 Contents (deb) [103 MB] Get:15 http://security.ubuntu.com/ubuntu jammy-security/restricted amd64 Packages [1,779 kB] Get:16 http://security.ubuntu.com/ubuntu jammy-security/restricted Translation-en [302 kB] Get:17 http://de.archive.ubuntu.com/ubuntu jammy-updates amd64 Contents (deb) [107 MB] Get:18 http://de.archive.ubuntu.com/ubuntu jammy-updates/restricted amd64 Packages [1,836 kB] Get:19 http://de.archive.ubuntu.com/ubuntu jammy-updates/restricted Translation-en [312 kB] Fetched 315 MB in 47s (6,640 kB/s) Reading package lists... [1] "Libraries: " "/home/omnipath/local/R/4.4-3.19" [3] "/home/omnipath/local/R/4.4" "/opt/R-alpha/lib/R/library" Warning message: package ‘remotes’ was built under R version 4.5.0 Reading package lists... Building dependency tree... Reading state information... libicu-dev is already the newest version (70.1-2). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libglpk-dev is already the newest version (5.0-1). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libxml2-dev is already the newest version (2.9.13+dfsg-1ubuntu0.4). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... make is already the newest version (4.3-4.1build1). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... pandoc is already the newest version (2.9.2.1-3ubuntu2). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libcurl4-openssl-dev is already the newest version (7.81.0-1ubuntu1.16). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libssl-dev is already the newest version (3.0.2-0ubuntu1.15). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. apt-get install -y libicu-dev apt-get install -y libglpk-dev 0 0 apt-get install -y libxml2-dev apt-get install -y make 0 0 apt-get install -y pandoc apt-get install -y libcurl4-openssl-dev 0 0 apt-get install -y libssl-dev 0 [ Finished: 2024-05-07 15:19:00 CEST ]