[ Started: 2024-05-11 15:18:02 CEST ]
[ CARNIVAL v2.7.2 for BioC-3.19 from https://github.com/saezlab/CARNIVAL@master (2b8887a 2023-12-06 13:18:32) ]

Get:1 https://cloud.r-project.org/bin/linux/ubuntu jammy-cran40/ InRelease [3,626 B]
Hit:2 http://de.archive.ubuntu.com/ubuntu jammy InRelease
Get:3 http://de.archive.ubuntu.com/ubuntu jammy-updates InRelease [119 kB]
Hit:4 http://de.archive.ubuntu.com/ubuntu jammy-backports InRelease
Get:5 http://security.ubuntu.com/ubuntu jammy-security InRelease [110 kB]
Get:6 http://de.archive.ubuntu.com/ubuntu jammy-updates/main i386 Packages [624 kB]
Get:7 http://de.archive.ubuntu.com/ubuntu jammy-updates/main amd64 Packages [1,638 kB]
Get:8 http://de.archive.ubuntu.com/ubuntu jammy-updates/universe i386 Packages [702 kB]
Get:9 http://de.archive.ubuntu.com/ubuntu jammy-updates/universe amd64 Packages [1,074 kB]
Fetched 4,271 kB in 1s (4,214 kB/s)
Reading package lists...
[1] "Libraries: "                     "/home/omnipath/local/R/4.4-3.19"
[3] "/home/omnipath/local/R/4.4"      "/opt/R-alpha/lib/R/library"     
Warning message:
package ‘remotes’ was built under R version 4.5.0 
Reading package lists...
Building dependency tree...
Reading state information...
libicu-dev is already the newest version (70.1-2).
The following packages were automatically installed and are no longer required:
  libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13
  libncurses5-dev libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 27 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
libglpk-dev is already the newest version (5.0-1).
The following packages were automatically installed and are no longer required:
  libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13
  libncurses5-dev libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 27 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
libxml2-dev is already the newest version (2.9.13+dfsg-1ubuntu0.4).
The following packages were automatically installed and are no longer required:
  libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13
  libncurses5-dev libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 27 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
make is already the newest version (4.3-4.1build1).
The following packages were automatically installed and are no longer required:
  libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13
  libncurses5-dev libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 27 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
pandoc is already the newest version (2.9.2.1-3ubuntu2).
The following packages were automatically installed and are no longer required:
  libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13
  libncurses5-dev libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 27 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
libcurl4-openssl-dev is already the newest version (7.81.0-1ubuntu1.16).
The following packages were automatically installed and are no longer required:
  libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13
  libncurses5-dev libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 27 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
libssl-dev is already the newest version (3.0.2-0ubuntu1.15).
The following packages were automatically installed and are no longer required:
  libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13
  libncurses5-dev libobjc-9-dev libstdc++-9-dev
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 27 not to upgrade.
          apt-get install -y libicu-dev          apt-get install -y libglpk-dev 
                                      0                                       0 
         apt-get install -y libxml2-dev                 apt-get install -y make 
                                      0                                       0 
              apt-get install -y pandoc apt-get install -y libcurl4-openssl-dev 
                                      0                                       0 
          apt-get install -y libssl-dev 
                                      0 
[ Finished: 2024-05-11 15:18:12 CEST ]