[ Started: 2025-06-21 02:17:38 CEST ]
[ CARNIVAL v2.16.0 for BioC-3.20 from https://git.bioconductor.org/packages/CARNIVAL@RELEASE_3_20 (a7305b3 2024-10-29 10:46:30) ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.4-3.20"
[3] "/home/omnipath/local/R/4.4"      "/usr/lib/R/library"             
Bioconductor version '3.20' is out-of-date; the current release version '3.21'
  is available with R version '4.5'; see https://bioconductor.org/install
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.20 (BiocManager 1.30.26), R 4.4.1 (2024-06-14)
Old packages: 'Deriv', 'ggnewscale'
trying URL 'https://cloud.r-project.org/src/contrib/Deriv_4.2.0.tar.gz'
Content type 'application/x-gzip' length 38752 bytes (37 KB)
==================================================
downloaded 37 KB

trying URL 'https://cloud.r-project.org/src/contrib/ggnewscale_0.5.2.tar.gz'
Content type 'application/x-gzip' length 415315 bytes (405 KB)
==================================================
downloaded 405 KB

* installing *source* package ‘Deriv’ ...
** package ‘Deriv’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Deriv)
* installing *source* package ‘ggnewscale’ ...
** package ‘ggnewscale’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ggnewscale)

The downloaded source packages are in
	‘/tmp/RtmpwUxBLA/downloaded_packages’
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.20 (BiocManager 1.30.26), R 4.4.1 (2024-06-14)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

Skipping 1 packages ahead of CRAN: BiocStyle
[ Finished: 2025-06-21 02:17:57 CEST ]