[ Started: 2025-06-22 02:17:49 CEST ]
[ CARNIVAL v2.16.0 for BioC-3.20 from https://git.bioconductor.org/packages/CARNIVAL@RELEASE_3_20 (a7305b3 2024-10-29 10:46:30) ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.4-3.20"
[3] "/home/omnipath/local/R/4.4"      "/usr/lib/R/library"             
Bioconductor version '3.20' is out-of-date; the current release version '3.21'
  is available with R version '4.5'; see https://bioconductor.org/install
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.20 (BiocManager 1.30.26), R 4.4.1 (2024-06-14)
Old packages: 'aplot', 'ggfun', 'ggVennDiagram', 'patchwork', 'scatterpie'
trying URL 'https://cloud.r-project.org/src/contrib/aplot_0.2.7.tar.gz'
Content type 'application/x-gzip' length 55904 bytes (54 KB)
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downloaded 54 KB

trying URL 'https://cloud.r-project.org/src/contrib/ggfun_0.1.9.tar.gz'
Content type 'application/x-gzip' length 107505 bytes (104 KB)
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downloaded 104 KB

trying URL 'https://cloud.r-project.org/src/contrib/ggVennDiagram_1.5.4.tar.gz'
Content type 'application/x-gzip' length 5045307 bytes (4.8 MB)
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downloaded 4.8 MB

trying URL 'https://cloud.r-project.org/src/contrib/patchwork_1.3.1.tar.gz'
Content type 'application/x-gzip' length 3323546 bytes (3.2 MB)
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downloaded 3.2 MB

trying URL 'https://cloud.r-project.org/src/contrib/scatterpie_0.2.5.tar.gz'
Content type 'application/x-gzip' length 118875 bytes (116 KB)
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* installing *source* package ‘ggfun’ ...
** package ‘ggfun’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ggfun)
* installing *source* package ‘patchwork’ ...
** package ‘patchwork’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (patchwork)
* installing *source* package ‘aplot’ ...
** package ‘aplot’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (aplot)
* installing *source* package ‘scatterpie’ ...
** package ‘scatterpie’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (scatterpie)
* installing *source* package ‘ggVennDiagram’ ...
** package ‘ggVennDiagram’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ggVennDiagram)

The downloaded source packages are in
	‘/tmp/RtmpNiVlq8/downloaded_packages’
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.20 (BiocManager 1.30.26), R 4.4.1 (2024-06-14)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

Skipping 1 packages ahead of CRAN: BiocStyle
[ Finished: 2025-06-22 02:18:21 CEST ]