[ Started: 2025-04-03 00:05:33 CEST ]
[ CARNIVAL v2.7.2 for BioC-3.21 from https://github.com/saezlab/CARNIVAL@master (2b8887a 2023-12-06 13:18:32) ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.5-3.21"
[3] "/home/omnipath/local/R/4.5"      "/opt/R-devel/lib/R/library"     
Bioconductor version 3.21 (BiocManager 1.30.25), R Under development (unstable)
  (2025-02-12 r87715)
Old packages: 'BiocParallel', 'ComplexHeatmap', 'HDF5Array', 'leidenbase',
  'wppi', 'xfun'
trying URL 'https://bioconductor.org/packages/3.21/bioc/src/contrib/BiocParallel_1.41.5.tar.gz'
trying URL 'https://bioconductor.org/packages/3.21/bioc/src/contrib/ComplexHeatmap_2.23.1.tar.gz'
trying URL 'https://bioconductor.org/packages/3.21/bioc/src/contrib/HDF5Array_1.35.16.tar.gz'
trying URL 'https://cloud.r-project.org/src/contrib/leidenbase_0.1.35.tar.gz'
trying URL 'https://bioconductor.org/packages/3.21/bioc/src/contrib/wppi_1.15.0.tar.gz'
trying URL 'https://cloud.r-project.org/src/contrib/xfun_0.52.tar.gz'
* installing *source* package ‘BiocParallel’ ...
** this is package ‘BiocParallel’ version ‘1.41.5’
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether g++ -std=gnu++17 accepts -g... yes
checking for g++ -std=gnu++17 option to enable C++11 features... none needed
checking for library containing shm_open... none required
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for sys/mman.h... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
using C++11
g++ -std=gnu++11 -I"/opt/R-devel/lib/R/include" -DNDEBUG -I"./" -I'/home/omnipath/local/R/4.5-3.21/BH/include' -I'/home/omnipath/local/R/4.5-3.21/cpp11/include' -I/usr/local/include    -fpic  -g -O2   -c cpp11.cpp -o cpp11.o
g++ -std=gnu++11 -I"/opt/R-devel/lib/R/include" -DNDEBUG -I"./" -I'/home/omnipath/local/R/4.5-3.21/BH/include' -I'/home/omnipath/local/R/4.5-3.21/cpp11/include' -I/usr/local/include    -fpic  -g -O2   -c ipcmutex.cpp -o ipcmutex.o
g++ -std=gnu++11 -shared -L/usr/local/lib -o BiocParallel.so cpp11.o ipcmutex.o
installing to /home/omnipath/local/R/4.5-3.21/00LOCK-BiocParallel/00new/BiocParallel/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BiocParallel)
* installing *source* package ‘ComplexHeatmap’ ...
** this is package ‘ComplexHeatmap’ version ‘2.23.1’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ComplexHeatmap)
* installing *source* package ‘HDF5Array’ ...
** this is package ‘HDF5Array’ version ‘1.35.16’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HDF5Array)
* installing *source* package ‘leidenbase’ ...
** this is package ‘leidenbase’ version ‘0.1.35’
** package ‘leidenbase’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether the compiler supports GNU C++... yes
checking whether g++ -std=gnu++11 accepts -g... yes
checking for g++ -std=gnu++11 option to enable C++11 features... none needed
checking whether the compiler supports GNU Fortran... yes
checking whether gfortran accepts -g... yes
checking for expm1... yes
checking for fmin... yes
checking for finite... yes
checking for log2... yes
checking for log1p... yes
checking for rint... yes
checking for rintf... yes
checking for round... yes
checking for stpcpy... yes
checking for strcasecmp... yes
checking for _stricmp... no
checking for strdup... yes
checking for isfinite... no
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for sys/times.h... yes
checking for net/if.h... yes
checking for netinet/in.h... yes
checking for net/if_dl.h... no
checking for sys/sockio.h... no
checking for sys/un.h... yes
checking for sys/socket.h... yes
checking for sys/ioctl.h... yes
checking for sys/time.h... yes
checking for sys/file.h... yes
checking for struct sockaddr.sa_len... no
checking for xml2-config... /usr/bin/xml2-config
checking for xmlSAXUserParseFile in -lxml2... yes
checking for libxml/parser.h... yes
checking for __gmpz_add in -lgmp... yes
checking for gmp.h... yes
checking how to run the C++ preprocessor... g++ -std=gnu++11 -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for glp_read_mps in -lglpk... yes
checking for glpk.h... yes
configure: creating ./config.status
config.status: creating src/Makevars.tmp
config.status: creating src/Makevars
config.status: creating src/config.h

*** Compiler settings used:
    CC=gcc
    LD=
    CFLAGS=-g -O2
    CPPFLAGS=-I/usr/local/include
    CXX=g++ -std=gnu++11
    CXXFLAGS=-g -O2
    LDFLAGS=-L/usr/local/lib
    LIBS=
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/centrality/betweenness.c -o core/centrality/betweenness.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/centrality/centrality_other.c -o core/centrality/centrality_other.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/centrality/centralization.c -o core/centrality/centralization.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/centrality/closeness.c -o core/centrality/closeness.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/centrality/coreness.c -o core/centrality/coreness.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/centrality/prpack.cpp -o core/centrality/prpack.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/centrality/prpack/prpack_base_graph.cpp -o core/centrality/prpack/prpack_base_graph.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/centrality/prpack/prpack_igraph_graph.cpp -o core/centrality/prpack/prpack_igraph_graph.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/centrality/prpack/prpack_preprocessed_ge_graph.cpp -o core/centrality/prpack/prpack_preprocessed_ge_graph.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/centrality/prpack/prpack_preprocessed_gs_graph.cpp -o core/centrality/prpack/prpack_preprocessed_gs_graph.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/centrality/prpack/prpack_preprocessed_scc_graph.cpp -o core/centrality/prpack/prpack_preprocessed_scc_graph.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/centrality/prpack/prpack_preprocessed_schur_graph.cpp -o core/centrality/prpack/prpack_preprocessed_schur_graph.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/centrality/prpack/prpack_result.cpp -o core/centrality/prpack/prpack_result.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/centrality/prpack/prpack_solver.cpp -o core/centrality/prpack/prpack_solver.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/centrality/prpack/prpack_utils.cpp -o core/centrality/prpack/prpack_utils.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/cliques/cliquer/cliquer.c -o core/cliques/cliquer/cliquer.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/cliques/cliquer/cliquer_graph.c -o core/cliques/cliquer/cliquer_graph.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/cliques/cliquer/reorder.c -o core/cliques/cliquer/reorder.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/cliques/cliquer_wrapper.c -o core/cliques/cliquer_wrapper.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/cliques/cliques.c -o core/cliques/cliques.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/cliques/glet.c -o core/cliques/glet.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/cliques/maximal_cliques.c -o core/cliques/maximal_cliques.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/community/community_misc.c -o core/community/community_misc.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/community/edge_betweenness.c -o core/community/edge_betweenness.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/community/fast_modularity.c -o core/community/fast_modularity.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/community/fluid.c -o core/community/fluid.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/community/infomap/infomap.cc -o core/community/infomap/infomap.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/community/infomap/infomap_FlowGraph.cc -o core/community/infomap/infomap_FlowGraph.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/community/infomap/infomap_Greedy.cc -o core/community/infomap/infomap_Greedy.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/community/infomap/infomap_Node.cc -o core/community/infomap/infomap_Node.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/community/label_propagation.c -o core/community/label_propagation.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/community/leading_eigenvector.c -o core/community/leading_eigenvector.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/community/leiden.c -o core/community/leiden.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/community/louvain.c -o core/community/louvain.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/community/modularity.c -o core/community/modularity.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/community/optimal_modularity.c -o core/community/optimal_modularity.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/community/spinglass/NetDataTypes.cpp -o core/community/spinglass/NetDataTypes.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/community/spinglass/NetRoutines.cpp -o core/community/spinglass/NetRoutines.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/community/spinglass/clustertool.cpp -o core/community/spinglass/clustertool.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/community/spinglass/pottsmodel_2.cpp -o core/community/spinglass/pottsmodel_2.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/community/walktrap/walktrap.cpp -o core/community/walktrap/walktrap.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/community/walktrap/walktrap_communities.cpp -o core/community/walktrap/walktrap_communities.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/community/walktrap/walktrap_graph.cpp -o core/community/walktrap/walktrap_graph.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/community/walktrap/walktrap_heap.cpp -o core/community/walktrap/walktrap_heap.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/connectivity/cohesive_blocks.c -o core/connectivity/cohesive_blocks.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/connectivity/components.c -o core/connectivity/components.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/connectivity/separators.c -o core/connectivity/separators.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/constructors/adjacency.c -o core/constructors/adjacency.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/constructors/atlas.c -o core/constructors/atlas.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/constructors/basic_constructors.c -o core/constructors/basic_constructors.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/constructors/de_bruijn.c -o core/constructors/de_bruijn.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/constructors/famous.c -o core/constructors/famous.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/constructors/full.c -o core/constructors/full.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/constructors/kautz.c -o core/constructors/kautz.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/constructors/lcf.c -o core/constructors/lcf.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/constructors/linegraph.c -o core/constructors/linegraph.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/constructors/prufer.c -o core/constructors/prufer.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/constructors/regular.c -o core/constructors/regular.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/core/array.c -o core/core/array.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/core/buckets.c -o core/core/buckets.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/core/cutheap.c -o core/core/cutheap.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/core/dqueue.c -o core/core/dqueue.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/core/error.c -o core/core/error.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/core/estack.c -o core/core/estack.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/core/fixed_vectorlist.c -o core/core/fixed_vectorlist.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/core/grid.c -o core/core/grid.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/core/heap.c -o core/core/heap.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/core/indheap.c -o core/core/indheap.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/core/interruption.c -o core/core/interruption.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/core/marked_queue.c -o core/core/marked_queue.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/core/matrix.c -o core/core/matrix.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/core/memory.c -o core/core/memory.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/core/printing.c -o core/core/printing.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/core/progress.c -o core/core/progress.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/core/psumtree.c -o core/core/psumtree.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/core/set.c -o core/core/set.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/core/sparsemat.c -o core/core/sparsemat.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/core/spmatrix.c -o core/core/spmatrix.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/core/stack.c -o core/core/stack.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/core/statusbar.c -o core/core/statusbar.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/core/strvector.c -o core/core/strvector.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/core/trie.c -o core/core/trie.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/core/vector.c -o core/core/vector.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/core/vector_ptr.c -o core/core/vector_ptr.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/flow/flow.c -o core/flow/flow.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/flow/st-cuts.c -o core/flow/st-cuts.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/games/barabasi.c -o core/games/barabasi.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/games/callaway_traits.c -o core/games/callaway_traits.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/games/citations.c -o core/games/citations.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/games/correlated.c -o core/games/correlated.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/games/degree_sequence.c -o core/games/degree_sequence.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/games/degree_sequence_vl/gengraph_box_list.cpp -o core/games/degree_sequence_vl/gengraph_box_list.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/games/degree_sequence_vl/gengraph_degree_sequence.cpp -o core/games/degree_sequence_vl/gengraph_degree_sequence.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/games/degree_sequence_vl/gengraph_graph_molloy_hash.cpp -o core/games/degree_sequence_vl/gengraph_graph_molloy_hash.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/games/degree_sequence_vl/gengraph_graph_molloy_optimized.cpp -o core/games/degree_sequence_vl/gengraph_graph_molloy_optimized.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/games/degree_sequence_vl/gengraph_mr-connected.cpp -o core/games/degree_sequence_vl/gengraph_mr-connected.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/games/degree_sequence_vl/gengraph_powerlaw.cpp -o core/games/degree_sequence_vl/gengraph_powerlaw.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/games/degree_sequence_vl/gengraph_random.cpp -o core/games/degree_sequence_vl/gengraph_random.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/games/dotproduct.c -o core/games/dotproduct.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/games/erdos_renyi.c -o core/games/erdos_renyi.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/games/establishment.c -o core/games/establishment.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/games/forestfire.c -o core/games/forestfire.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/games/grg.c -o core/games/grg.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/games/growing_random.c -o core/games/growing_random.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/games/islands.c -o core/games/islands.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/games/k_regular.c -o core/games/k_regular.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/games/preference.c -o core/games/preference.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/games/recent_degree.c -o core/games/recent_degree.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/games/sbm.c -o core/games/sbm.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/games/static_fitness.c -o core/games/static_fitness.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/games/tree.c -o core/games/tree.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/games/watts_strogatz.c -o core/games/watts_strogatz.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/graph/adjlist.c -o core/graph/adjlist.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/graph/attributes.c -o core/graph/attributes.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/graph/basic_query.c -o core/graph/basic_query.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/graph/cattributes.c -o core/graph/cattributes.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/graph/iterators.c -o core/graph/iterators.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/graph/type_indexededgelist.c -o core/graph/type_indexededgelist.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/graph/visitors.c -o core/graph/visitors.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/hrg/hrg.cc -o core/hrg/hrg.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/hrg/hrg_types.cc -o core/hrg/hrg_types.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/internal/glpk_support.c -o core/internal/glpk_support.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/internal/hacks.c -o core/internal/hacks.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/internal/lsap.c -o core/internal/lsap.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/internal/qsort.c -o core/internal/qsort.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/internal/qsort_r.c -o core/internal/qsort_r.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/internal/zeroin.c -o core/internal/zeroin.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/io/dimacs.c -o core/io/dimacs.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/io/dl-lexer.c -o core/io/dl-lexer.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/io/dl-parser.c -o core/io/dl-parser.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/io/dl.c -o core/io/dl.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/io/dot.c -o core/io/dot.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/io/edgelist.c -o core/io/edgelist.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/io/gml-lexer.c -o core/io/gml-lexer.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/io/gml-parser.c -o core/io/gml-parser.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/io/gml-tree.c -o core/io/gml-tree.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/io/gml.c -o core/io/gml.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/io/graphdb.c -o core/io/graphdb.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/io/graphml.c -o core/io/graphml.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/io/leda.c -o core/io/leda.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/io/lgl-lexer.c -o core/io/lgl-lexer.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/io/lgl-parser.c -o core/io/lgl-parser.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/io/lgl.c -o core/io/lgl.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/io/ncol-lexer.c -o core/io/ncol-lexer.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/io/ncol-parser.c -o core/io/ncol-parser.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/io/ncol.c -o core/io/ncol.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/io/pajek-lexer.c -o core/io/pajek-lexer.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/io/pajek-parser.c -o core/io/pajek-parser.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/io/pajek.c -o core/io/pajek.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/isomorphism/bliss.cc -o core/isomorphism/bliss.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/isomorphism/bliss/defs.cc -o core/isomorphism/bliss/defs.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/isomorphism/bliss/graph.cc -o core/isomorphism/bliss/graph.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/isomorphism/bliss/heap.cc -o core/isomorphism/bliss/heap.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/isomorphism/bliss/orbit.cc -o core/isomorphism/bliss/orbit.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/isomorphism/bliss/partition.cc -o core/isomorphism/bliss/partition.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/isomorphism/bliss/uintseqhash.cc -o core/isomorphism/bliss/uintseqhash.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/isomorphism/bliss/utils.cc -o core/isomorphism/bliss/utils.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/isomorphism/isoclasses.c -o core/isomorphism/isoclasses.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/isomorphism/isomorphism_misc.c -o core/isomorphism/isomorphism_misc.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/isomorphism/lad.c -o core/isomorphism/lad.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/isomorphism/queries.c -o core/isomorphism/queries.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/isomorphism/vf2.c -o core/isomorphism/vf2.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/layout/circular.c -o core/layout/circular.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/layout/davidson_harel.c -o core/layout/davidson_harel.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/layout/drl/DensityGrid.cpp -o core/layout/drl/DensityGrid.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/layout/drl/DensityGrid_3d.cpp -o core/layout/drl/DensityGrid_3d.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/layout/drl/drl_graph.cpp -o core/layout/drl/drl_graph.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/layout/drl/drl_graph_3d.cpp -o core/layout/drl/drl_graph_3d.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/layout/drl/drl_layout.cpp -o core/layout/drl/drl_layout.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/layout/drl/drl_layout_3d.cpp -o core/layout/drl/drl_layout_3d.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/layout/drl/drl_parse.cpp -o core/layout/drl/drl_parse.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/layout/fruchterman_reingold.c -o core/layout/fruchterman_reingold.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/layout/gem.c -o core/layout/gem.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/layout/graphopt.c -o core/layout/graphopt.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/layout/kamada_kawai.c -o core/layout/kamada_kawai.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/layout/large_graph.c -o core/layout/large_graph.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/layout/layout_bipartite.c -o core/layout/layout_bipartite.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/layout/layout_grid.c -o core/layout/layout_grid.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/layout/layout_random.c -o core/layout/layout_random.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/layout/mds.c -o core/layout/mds.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/layout/merge_dla.c -o core/layout/merge_dla.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/layout/merge_grid.c -o core/layout/merge_grid.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/layout/reingold_tilford.c -o core/layout/reingold_tilford.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/layout/sugiyama.c -o core/layout/sugiyama.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/linalg/arpack.c -o core/linalg/arpack.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/linalg/blas.c -o core/linalg/blas.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/linalg/eigen.c -o core/linalg/eigen.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/linalg/lapack.c -o core/linalg/lapack.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/math/bfgs.c -o core/math/bfgs.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/math/complex.c -o core/math/complex.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/math/utils.c -o core/math/utils.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/misc/bipartite.c -o core/misc/bipartite.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/misc/chordality.c -o core/misc/chordality.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/misc/cocitation.c -o core/misc/cocitation.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/misc/coloring.c -o core/misc/coloring.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/misc/conversion.c -o core/misc/conversion.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c core/misc/degree_sequence.cpp -o core/misc/degree_sequence.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/misc/embedding.c -o core/misc/embedding.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/misc/feedback_arc_set.c -o core/misc/feedback_arc_set.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/misc/graphicality.c -o core/misc/graphicality.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/misc/matching.c -o core/misc/matching.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/misc/microscopic_update.c -o core/misc/microscopic_update.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/misc/mixing.c -o core/misc/mixing.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/misc/motifs.c -o core/misc/motifs.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/misc/other.c -o core/misc/other.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/misc/scan.c -o core/misc/scan.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/misc/sir.c -o core/misc/sir.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/misc/spanning_trees.c -o core/misc/spanning_trees.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/operators/add_edge.c -o core/operators/add_edge.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/operators/complementer.c -o core/operators/complementer.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/operators/compose.c -o core/operators/compose.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/operators/connect_neighborhood.c -o core/operators/connect_neighborhood.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/operators/contract.c -o core/operators/contract.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/operators/difference.c -o core/operators/difference.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/operators/disjoint_union.c -o core/operators/disjoint_union.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/operators/intersection.c -o core/operators/intersection.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/operators/misc_internal.c -o core/operators/misc_internal.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/operators/permute.c -o core/operators/permute.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/operators/rewire.c -o core/operators/rewire.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/operators/rewire_edges.c -o core/operators/rewire_edges.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/operators/simplify.c -o core/operators/simplify.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/operators/subgraph.c -o core/operators/subgraph.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/operators/union.c -o core/operators/union.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/paths/all_shortest_paths.c -o core/paths/all_shortest_paths.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/paths/bellman_ford.c -o core/paths/bellman_ford.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/paths/dijkstra.c -o core/paths/dijkstra.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/paths/distances.c -o core/paths/distances.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/paths/eulerian.c -o core/paths/eulerian.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/paths/histogram.c -o core/paths/histogram.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/paths/johnson.c -o core/paths/johnson.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/paths/random_walk.c -o core/paths/random_walk.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/paths/shortest_paths.c -o core/paths/shortest_paths.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/paths/simple_paths.c -o core/paths/simple_paths.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/paths/unweighted.c -o core/paths/unweighted.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/properties/basic_properties.c -o core/properties/basic_properties.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/properties/constraint.c -o core/properties/constraint.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/properties/convergence_degree.c -o core/properties/convergence_degree.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/properties/dag.c -o core/properties/dag.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/properties/degrees.c -o core/properties/degrees.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/properties/girth.c -o core/properties/girth.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/properties/loops.c -o core/properties/loops.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/properties/multiplicity.c -o core/properties/multiplicity.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/properties/neighborhood.c -o core/properties/neighborhood.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/properties/spectral.c -o core/properties/spectral.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/properties/trees.c -o core/properties/trees.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/properties/triangles.c -o core/properties/triangles.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/random/random.c -o core/random/random.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/scg/scg.c -o core/scg/scg.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/scg/scg_approximate_methods.c -o core/scg/scg_approximate_methods.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/scg/scg_exact_scg.c -o core/scg/scg_exact_scg.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/scg/scg_kmeans.c -o core/scg/scg_kmeans.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/scg/scg_optimal_method.c -o core/scg/scg_optimal_method.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/scg/scg_utils.c -o core/scg/scg_utils.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c core/version.c -o core/version.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_add.c -o vendor/cs/cs_add.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_amd.c -o vendor/cs/cs_amd.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_chol.c -o vendor/cs/cs_chol.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_cholsol.c -o vendor/cs/cs_cholsol.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_compress.c -o vendor/cs/cs_compress.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_counts.c -o vendor/cs/cs_counts.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_cumsum.c -o vendor/cs/cs_cumsum.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_dfs.c -o vendor/cs/cs_dfs.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_dmperm.c -o vendor/cs/cs_dmperm.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_droptol.c -o vendor/cs/cs_droptol.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_dropzeros.c -o vendor/cs/cs_dropzeros.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_dupl.c -o vendor/cs/cs_dupl.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_entry.c -o vendor/cs/cs_entry.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_ereach.c -o vendor/cs/cs_ereach.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_etree.c -o vendor/cs/cs_etree.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_fkeep.c -o vendor/cs/cs_fkeep.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_gaxpy.c -o vendor/cs/cs_gaxpy.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_happly.c -o vendor/cs/cs_happly.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_house.c -o vendor/cs/cs_house.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_ipvec.c -o vendor/cs/cs_ipvec.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_leaf.c -o vendor/cs/cs_leaf.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_load.c -o vendor/cs/cs_load.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_lsolve.c -o vendor/cs/cs_lsolve.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_ltsolve.c -o vendor/cs/cs_ltsolve.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_lu.c -o vendor/cs/cs_lu.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_lusol.c -o vendor/cs/cs_lusol.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_malloc.c -o vendor/cs/cs_malloc.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_maxtrans.c -o vendor/cs/cs_maxtrans.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_multiply.c -o vendor/cs/cs_multiply.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_norm.c -o vendor/cs/cs_norm.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_permute.c -o vendor/cs/cs_permute.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_pinv.c -o vendor/cs/cs_pinv.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_post.c -o vendor/cs/cs_post.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_print.c -o vendor/cs/cs_print.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_pvec.c -o vendor/cs/cs_pvec.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_qr.c -o vendor/cs/cs_qr.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_qrsol.c -o vendor/cs/cs_qrsol.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_randperm.c -o vendor/cs/cs_randperm.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_reach.c -o vendor/cs/cs_reach.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_scatter.c -o vendor/cs/cs_scatter.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_scc.c -o vendor/cs/cs_scc.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_schol.c -o vendor/cs/cs_schol.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_spsolve.c -o vendor/cs/cs_spsolve.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_sqr.c -o vendor/cs/cs_sqr.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_symperm.c -o vendor/cs/cs_symperm.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_tdfs.c -o vendor/cs/cs_tdfs.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_transpose.c -o vendor/cs/cs_transpose.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_updown.c -o vendor/cs/cs_updown.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_usolve.c -o vendor/cs/cs_usolve.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_util.c -o vendor/cs/cs_util.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/cs/cs_utsolve.c -o vendor/cs/cs_utsolve.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/mini-gmp/mini-gmp.c -o vendor/mini-gmp/mini-gmp.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/plfit/gss.c -o vendor/plfit/gss.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/plfit/hzeta.c -o vendor/plfit/hzeta.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/plfit/kolmogorov.c -o vendor/plfit/kolmogorov.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/plfit/lbfgs.c -o vendor/plfit/lbfgs.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/plfit/mt.c -o vendor/plfit/mt.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/plfit/options.c -o vendor/plfit/options.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/plfit/platform.c -o vendor/plfit/platform.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/plfit/plfit.c -o vendor/plfit/plfit.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/plfit/plfit_error.c -o vendor/plfit/plfit_error.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/plfit/rbinom.c -o vendor/plfit/rbinom.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/plfit/sampling.c -o vendor/plfit/sampling.o
gfortran -fvisibility=hidden -fpic  -g -O2  -c vendor/arpack/dgetv0.f -o vendor/arpack/dgetv0.o
gfortran -fvisibility=hidden -fpic  -g -O2  -c vendor/arpack/dlaqrb.f -o vendor/arpack/dlaqrb.o
gfortran -fvisibility=hidden -fpic  -g -O2  -c vendor/arpack/dmout.f -o vendor/arpack/dmout.o
gfortran -fvisibility=hidden -fpic  -g -O2  -c vendor/arpack/dnaitr.f -o vendor/arpack/dnaitr.o
gfortran -fvisibility=hidden -fpic  -g -O2  -c vendor/arpack/dnapps.f -o vendor/arpack/dnapps.o
gfortran -fvisibility=hidden -fpic  -g -O2  -c vendor/arpack/dnaup2.f -o vendor/arpack/dnaup2.o
gfortran -fvisibility=hidden -fpic  -g -O2  -c vendor/arpack/dnaupd.f -o vendor/arpack/dnaupd.o
gfortran -fvisibility=hidden -fpic  -g -O2  -c vendor/arpack/dnconv.f -o vendor/arpack/dnconv.o
gfortran -fvisibility=hidden -fpic  -g -O2  -c vendor/arpack/dneigh.f -o vendor/arpack/dneigh.o
gfortran -fvisibility=hidden -fpic  -g -O2  -c vendor/arpack/dneupd.f -o vendor/arpack/dneupd.o
gfortran -fvisibility=hidden -fpic  -g -O2  -c vendor/arpack/dngets.f -o vendor/arpack/dngets.o
gfortran -fvisibility=hidden -fpic  -g -O2  -c vendor/arpack/dsaitr.f -o vendor/arpack/dsaitr.o
gfortran -fvisibility=hidden -fpic  -g -O2  -c vendor/arpack/dsapps.f -o vendor/arpack/dsapps.o
gfortran -fvisibility=hidden -fpic  -g -O2  -c vendor/arpack/dsaup2.f -o vendor/arpack/dsaup2.o
gfortran -fvisibility=hidden -fpic  -g -O2  -c vendor/arpack/dsaupd.f -o vendor/arpack/dsaupd.o
gfortran -fvisibility=hidden -fpic  -g -O2  -c vendor/arpack/dsconv.f -o vendor/arpack/dsconv.o
gfortran -fvisibility=hidden -fpic  -g -O2  -c vendor/arpack/dseigt.f -o vendor/arpack/dseigt.o
gfortran -fvisibility=hidden -fpic  -g -O2  -c vendor/arpack/dsesrt.f -o vendor/arpack/dsesrt.o
gfortran -fvisibility=hidden -fpic  -g -O2  -c vendor/arpack/dseupd.f -o vendor/arpack/dseupd.o
gfortran -fvisibility=hidden -fpic  -g -O2  -c vendor/arpack/dsgets.f -o vendor/arpack/dsgets.o
gfortran -fvisibility=hidden -fpic  -g -O2  -c vendor/arpack/dsortc.f -o vendor/arpack/dsortc.o
gfortran -fvisibility=hidden -fpic  -g -O2  -c vendor/arpack/dsortr.f -o vendor/arpack/dsortr.o
gfortran -fvisibility=hidden -fpic  -g -O2  -c vendor/arpack/dstatn.f -o vendor/arpack/dstatn.o
gfortran -fvisibility=hidden -fpic  -g -O2  -c vendor/arpack/dstats.f -o vendor/arpack/dstats.o
gfortran -fvisibility=hidden -fpic  -g -O2  -c vendor/arpack/dstqrb.f -o vendor/arpack/dstqrb.o
gfortran -fvisibility=hidden -fpic  -g -O2  -c vendor/arpack/dvout.f -o vendor/arpack/dvout.o
gfortran -fvisibility=hidden -fpic  -g -O2  -c vendor/arpack/ivout.f -o vendor/arpack/ivout.o
gfortran -fvisibility=hidden -fpic  -g -O2  -c vendor/arpack/second.f -o vendor/arpack/second.o
gfortran -fvisibility=hidden -fpic  -g -O2  -c vendor/arpack/wrap.f -o vendor/arpack/wrap.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c vendor/simpleraytracer/Color.cpp -o vendor/simpleraytracer/Color.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c vendor/simpleraytracer/Light.cpp -o vendor/simpleraytracer/Light.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c vendor/simpleraytracer/Point.cpp -o vendor/simpleraytracer/Point.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c vendor/simpleraytracer/RIgraphRay.cpp -o vendor/simpleraytracer/RIgraphRay.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c vendor/simpleraytracer/Ray.cpp -o vendor/simpleraytracer/Ray.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c vendor/simpleraytracer/RayTracer.cpp -o vendor/simpleraytracer/RayTracer.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c vendor/simpleraytracer/RayVector.cpp -o vendor/simpleraytracer/RayVector.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c vendor/simpleraytracer/Shape.cpp -o vendor/simpleraytracer/Shape.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c vendor/simpleraytracer/Sphere.cpp -o vendor/simpleraytracer/Sphere.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c vendor/simpleraytracer/Triangle.cpp -o vendor/simpleraytracer/Triangle.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c vendor/simpleraytracer/unit_limiter.cpp -o vendor/simpleraytracer/unit_limiter.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/uuid/R.c -o vendor/uuid/R.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/uuid/clear.c -o vendor/uuid/clear.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/uuid/compare.c -o vendor/uuid/compare.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/uuid/copy.c -o vendor/uuid/copy.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/uuid/gen_uuid.c -o vendor/uuid/gen_uuid.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/uuid/isnull.c -o vendor/uuid/isnull.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/uuid/pack.c -o vendor/uuid/pack.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/uuid/parse.c -o vendor/uuid/parse.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/uuid/unpack.c -o vendor/uuid/unpack.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2  -c vendor/uuid/unparse.c -o vendor/uuid/unparse.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c leidenalg/CPMVertexPartition.cpp -o leidenalg/CPMVertexPartition.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c leidenalg/GraphHelper.cpp -o leidenalg/GraphHelper.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c leidenalg/LinearResolutionParameterVertexPartition.cpp -o leidenalg/LinearResolutionParameterVertexPartition.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c leidenalg/ModularityVertexPartition.cpp -o leidenalg/ModularityVertexPartition.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c leidenalg/MutableVertexPartition.cpp -o leidenalg/MutableVertexPartition.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c leidenalg/Optimiser.cpp -o leidenalg/Optimiser.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c leidenalg/RBConfigurationVertexPartition.cpp -o leidenalg/RBConfigurationVertexPartition.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c leidenalg/RBERVertexPartition.cpp -o leidenalg/RBERVertexPartition.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c leidenalg/ResolutionParameterVertexPartition.cpp -o leidenalg/ResolutionParameterVertexPartition.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c leidenalg/SignificanceVertexPartition.cpp -o leidenalg/SignificanceVertexPartition.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c leidenalg/SurpriseVertexPartition.cpp -o leidenalg/SurpriseVertexPartition.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c leidenbase/leidenFindPartition.cpp -o leidenbase/leidenFindPartition.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG -DUSING_R -I. -Icore -Iinclude -Ivendor -I. -Ileidenalg -Ileidenbase -I/usr/include/libxml2 -DNDEBUG -DNTIMER -DNPRINT -DINTERNAL_ARPACK -DR_NO_REMAP -DPRPACK_IGRAPH_SUPPORT -DIGRAPH_THREAD_LOCAL=/**/  -I/usr/local/include   -fvisibility=hidden -fpic  -g -O2   -c leidenbase/leidenFindPartitionR2C.cpp -o leidenbase/leidenFindPartitionR2C.o
g++ -std=gnu++17 -shared -L/usr/local/lib -o leidenbase.so core/centrality/betweenness.o core/centrality/centrality_other.o core/centrality/centralization.o core/centrality/closeness.o core/centrality/coreness.o core/centrality/prpack.o core/centrality/prpack/prpack_base_graph.o core/centrality/prpack/prpack_igraph_graph.o core/centrality/prpack/prpack_preprocessed_ge_graph.o core/centrality/prpack/prpack_preprocessed_gs_graph.o core/centrality/prpack/prpack_preprocessed_scc_graph.o core/centrality/prpack/prpack_preprocessed_schur_graph.o core/centrality/prpack/prpack_result.o core/centrality/prpack/prpack_solver.o core/centrality/prpack/prpack_utils.o core/cliques/cliquer/cliquer.o core/cliques/cliquer/cliquer_graph.o core/cliques/cliquer/reorder.o core/cliques/cliquer_wrapper.o core/cliques/cliques.o core/cliques/glet.o core/cliques/maximal_cliques.o core/community/community_misc.o core/community/edge_betweenness.o core/community/fast_modularity.o core/community/fluid.o core/community/infomap/infomap.o core/community/infomap/infomap_FlowGraph.o core/community/infomap/infomap_Greedy.o core/community/infomap/infomap_Node.o core/community/label_propagation.o core/community/leading_eigenvector.o core/community/leiden.o core/community/louvain.o core/community/modularity.o core/community/optimal_modularity.o core/community/spinglass/NetDataTypes.o core/community/spinglass/NetRoutines.o core/community/spinglass/clustertool.o core/community/spinglass/pottsmodel_2.o core/community/walktrap/walktrap.o core/community/walktrap/walktrap_communities.o core/community/walktrap/walktrap_graph.o core/community/walktrap/walktrap_heap.o core/connectivity/cohesive_blocks.o core/connectivity/components.o core/connectivity/separators.o core/constructors/adjacency.o core/constructors/atlas.o core/constructors/basic_constructors.o core/constructors/de_bruijn.o core/constructors/famous.o core/constructors/full.o core/constructors/kautz.o core/constructors/lcf.o core/constructors/linegraph.o core/constructors/prufer.o core/constructors/regular.o core/core/array.o core/core/buckets.o core/core/cutheap.o core/core/dqueue.o core/core/error.o core/core/estack.o core/core/fixed_vectorlist.o core/core/grid.o core/core/heap.o core/core/indheap.o core/core/interruption.o core/core/marked_queue.o core/core/matrix.o core/core/memory.o core/core/printing.o core/core/progress.o core/core/psumtree.o core/core/set.o core/core/sparsemat.o core/core/spmatrix.o core/core/stack.o core/core/statusbar.o core/core/strvector.o core/core/trie.o core/core/vector.o core/core/vector_ptr.o core/flow/flow.o core/flow/st-cuts.o core/games/barabasi.o core/games/callaway_traits.o core/games/citations.o core/games/correlated.o core/games/degree_sequence.o core/games/degree_sequence_vl/gengraph_box_list.o core/games/degree_sequence_vl/gengraph_degree_sequence.o core/games/degree_sequence_vl/gengraph_graph_molloy_hash.o core/games/degree_sequence_vl/gengraph_graph_molloy_optimized.o core/games/degree_sequence_vl/gengraph_mr-connected.o core/games/degree_sequence_vl/gengraph_powerlaw.o core/games/degree_sequence_vl/gengraph_random.o core/games/dotproduct.o core/games/erdos_renyi.o core/games/establishment.o core/games/forestfire.o core/games/grg.o core/games/growing_random.o core/games/islands.o core/games/k_regular.o core/games/preference.o core/games/recent_degree.o core/games/sbm.o core/games/static_fitness.o core/games/tree.o core/games/watts_strogatz.o core/graph/adjlist.o core/graph/attributes.o core/graph/basic_query.o core/graph/cattributes.o core/graph/iterators.o core/graph/type_indexededgelist.o core/graph/visitors.o core/hrg/hrg.o core/hrg/hrg_types.o core/internal/glpk_support.o core/internal/hacks.o core/internal/lsap.o core/internal/qsort.o core/internal/qsort_r.o core/internal/zeroin.o core/io/dimacs.o core/io/dl-lexer.o core/io/dl-parser.o core/io/dl.o core/io/dot.o core/io/edgelist.o core/io/gml-lexer.o core/io/gml-parser.o core/io/gml-tree.o core/io/gml.o core/io/graphdb.o core/io/graphml.o core/io/leda.o core/io/lgl-lexer.o core/io/lgl-parser.o core/io/lgl.o core/io/ncol-lexer.o core/io/ncol-parser.o core/io/ncol.o core/io/pajek-lexer.o core/io/pajek-parser.o core/io/pajek.o core/isomorphism/bliss.o core/isomorphism/bliss/defs.o core/isomorphism/bliss/graph.o core/isomorphism/bliss/heap.o core/isomorphism/bliss/orbit.o core/isomorphism/bliss/partition.o core/isomorphism/bliss/uintseqhash.o core/isomorphism/bliss/utils.o core/isomorphism/isoclasses.o core/isomorphism/isomorphism_misc.o core/isomorphism/lad.o core/isomorphism/queries.o core/isomorphism/vf2.o core/layout/circular.o core/layout/davidson_harel.o core/layout/drl/DensityGrid.o core/layout/drl/DensityGrid_3d.o core/layout/drl/drl_graph.o core/layout/drl/drl_graph_3d.o core/layout/drl/drl_layout.o core/layout/drl/drl_layout_3d.o core/layout/drl/drl_parse.o core/layout/fruchterman_reingold.o core/layout/gem.o core/layout/graphopt.o core/layout/kamada_kawai.o core/layout/large_graph.o core/layout/layout_bipartite.o core/layout/layout_grid.o core/layout/layout_random.o core/layout/mds.o core/layout/merge_dla.o core/layout/merge_grid.o core/layout/reingold_tilford.o core/layout/sugiyama.o core/linalg/arpack.o core/linalg/blas.o core/linalg/eigen.o core/linalg/lapack.o core/math/bfgs.o core/math/complex.o core/math/utils.o core/misc/bipartite.o core/misc/chordality.o core/misc/cocitation.o core/misc/coloring.o core/misc/conversion.o core/misc/degree_sequence.o core/misc/embedding.o core/misc/feedback_arc_set.o core/misc/graphicality.o core/misc/matching.o core/misc/microscopic_update.o core/misc/mixing.o core/misc/motifs.o core/misc/other.o core/misc/scan.o core/misc/sir.o core/misc/spanning_trees.o core/operators/add_edge.o core/operators/complementer.o core/operators/compose.o core/operators/connect_neighborhood.o core/operators/contract.o core/operators/difference.o core/operators/disjoint_union.o core/operators/intersection.o core/operators/misc_internal.o core/operators/permute.o core/operators/rewire.o core/operators/rewire_edges.o core/operators/simplify.o core/operators/subgraph.o core/operators/union.o core/paths/all_shortest_paths.o core/paths/bellman_ford.o core/paths/dijkstra.o core/paths/distances.o core/paths/eulerian.o core/paths/histogram.o core/paths/johnson.o core/paths/random_walk.o core/paths/shortest_paths.o core/paths/simple_paths.o core/paths/unweighted.o core/properties/basic_properties.o core/properties/constraint.o core/properties/convergence_degree.o core/properties/dag.o core/properties/degrees.o core/properties/girth.o core/properties/loops.o core/properties/multiplicity.o core/properties/neighborhood.o core/properties/spectral.o core/properties/trees.o core/properties/triangles.o core/random/random.o core/scg/scg.o core/scg/scg_approximate_methods.o core/scg/scg_exact_scg.o core/scg/scg_kmeans.o core/scg/scg_optimal_method.o core/scg/scg_utils.o core/version.o vendor/cs/cs_add.o vendor/cs/cs_amd.o vendor/cs/cs_chol.o vendor/cs/cs_cholsol.o vendor/cs/cs_compress.o vendor/cs/cs_counts.o vendor/cs/cs_cumsum.o vendor/cs/cs_dfs.o vendor/cs/cs_dmperm.o vendor/cs/cs_droptol.o vendor/cs/cs_dropzeros.o vendor/cs/cs_dupl.o vendor/cs/cs_entry.o vendor/cs/cs_ereach.o vendor/cs/cs_etree.o vendor/cs/cs_fkeep.o vendor/cs/cs_gaxpy.o vendor/cs/cs_happly.o vendor/cs/cs_house.o vendor/cs/cs_ipvec.o vendor/cs/cs_leaf.o vendor/cs/cs_load.o vendor/cs/cs_lsolve.o vendor/cs/cs_ltsolve.o vendor/cs/cs_lu.o vendor/cs/cs_lusol.o vendor/cs/cs_malloc.o vendor/cs/cs_maxtrans.o vendor/cs/cs_multiply.o vendor/cs/cs_norm.o vendor/cs/cs_permute.o vendor/cs/cs_pinv.o vendor/cs/cs_post.o vendor/cs/cs_print.o vendor/cs/cs_pvec.o vendor/cs/cs_qr.o vendor/cs/cs_qrsol.o vendor/cs/cs_randperm.o vendor/cs/cs_reach.o vendor/cs/cs_scatter.o vendor/cs/cs_scc.o vendor/cs/cs_schol.o vendor/cs/cs_spsolve.o vendor/cs/cs_sqr.o vendor/cs/cs_symperm.o vendor/cs/cs_tdfs.o vendor/cs/cs_transpose.o vendor/cs/cs_updown.o vendor/cs/cs_usolve.o vendor/cs/cs_util.o vendor/cs/cs_utsolve.o vendor/mini-gmp/mini-gmp.o vendor/plfit/gss.o vendor/plfit/hzeta.o vendor/plfit/kolmogorov.o vendor/plfit/lbfgs.o vendor/plfit/mt.o vendor/plfit/options.o vendor/plfit/platform.o vendor/plfit/plfit.o vendor/plfit/plfit_error.o vendor/plfit/rbinom.o vendor/plfit/sampling.o vendor/arpack/dgetv0.o vendor/arpack/dlaqrb.o vendor/arpack/dmout.o vendor/arpack/dnaitr.o vendor/arpack/dnapps.o vendor/arpack/dnaup2.o vendor/arpack/dnaupd.o vendor/arpack/dnconv.o vendor/arpack/dneigh.o vendor/arpack/dneupd.o vendor/arpack/dngets.o vendor/arpack/dsaitr.o vendor/arpack/dsapps.o vendor/arpack/dsaup2.o vendor/arpack/dsaupd.o vendor/arpack/dsconv.o vendor/arpack/dseigt.o vendor/arpack/dsesrt.o vendor/arpack/dseupd.o vendor/arpack/dsgets.o vendor/arpack/dsortc.o vendor/arpack/dsortr.o vendor/arpack/dstatn.o vendor/arpack/dstats.o vendor/arpack/dstqrb.o vendor/arpack/dvout.o vendor/arpack/ivout.o vendor/arpack/second.o vendor/arpack/wrap.o vendor/simpleraytracer/Color.o vendor/simpleraytracer/Light.o vendor/simpleraytracer/Point.o vendor/simpleraytracer/RIgraphRay.o vendor/simpleraytracer/Ray.o vendor/simpleraytracer/RayTracer.o vendor/simpleraytracer/RayVector.o vendor/simpleraytracer/Shape.o vendor/simpleraytracer/Sphere.o vendor/simpleraytracer/Triangle.o vendor/simpleraytracer/unit_limiter.o vendor/uuid/R.o vendor/uuid/clear.o vendor/uuid/compare.o vendor/uuid/copy.o vendor/uuid/gen_uuid.o vendor/uuid/isnull.o vendor/uuid/pack.o vendor/uuid/parse.o vendor/uuid/unpack.o vendor/uuid/unparse.o leidenalg/CPMVertexPartition.o leidenalg/GraphHelper.o leidenalg/LinearResolutionParameterVertexPartition.o leidenalg/ModularityVertexPartition.o leidenalg/MutableVertexPartition.o leidenalg/Optimiser.o leidenalg/RBConfigurationVertexPartition.o leidenalg/RBERVertexPartition.o leidenalg/ResolutionParameterVertexPartition.o leidenalg/SignificanceVertexPartition.o leidenalg/SurpriseVertexPartition.o leidenbase/leidenFindPartition.o leidenbase/leidenFindPartitionR2C.o -lxml2 -lgmp -lglpk -llapack -L/opt/R-devel/lib/R/lib -lRblas -lgfortran -lm -lquadmath
installing to /home/omnipath/local/R/4.5-3.21/00LOCK-leidenbase/00new/leidenbase/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (leidenbase)
* installing *source* package ‘wppi’ ...
** this is package ‘wppi’ version ‘1.15.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
[2025-04-03 00:08:10] [INFO]    [OmnipathR] Setting up new cache directory `/home/omnipath/.cache/OmnipathR`.
[2025-04-03 00:08:10] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2025-04-03 00:08:10] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-04-03 00:08:10] [INFO]    [OmnipathR] Initialized cache: `/home/omnipath/.cache/OmnipathR`.
[2025-04-03 00:08:10] [INFO]    [OmnipathR] Package `OmnipathR` packaged: 2025-04-01 23:14:37 UTC; omnipath
[2025-04-03 00:08:10] [INFO]    [OmnipathR] Package `OmnipathR` date/publication: NA
[2025-04-03 00:08:10] [INFO]    [OmnipathR] Package `OmnipathR` built: R 4.5.0; ; 2025-04-01 23:14:38 UTC; unix
[2025-04-03 00:08:10] [INFO]    [OmnipathR] Package `OmnipathR` version: 3.15.12
[2025-04-03 00:08:10] [INFO]    [OmnipathR] Package `OmnipathR` repository: NA
[2025-04-03 00:08:10] [INFO]    [OmnipathR] Session info: [version=R Under development (unstable) (2025-02-12 r87715); os=Ubuntu 24.04 LTS; system=x86_64, linux-gnu; ui=X11; language=en_GB; collate=C; ctype=en_GB.UTF-8; tz=Europe/Berlin; date=2025-04-03; pandoc=3.1.3 @ /usr/bin/ (via rmarkdown); quarto=NA]
[2025-04-03 00:08:10] [INFO]    [OmnipathR] External libraries: [cairo=1.18.0; cairoFT=2.13.2/2.15.0; pango=; png=1.6.43; jpeg=8.0; tiff=LIBTIFF, Version 4.5.1; tcl=8.6.14; curl=8.5.0; zlib=1.3; bzlib=1.0.8, 13-Jul-2019; xz=5.4.5; deflate=1.19; PCRE=10.42 2022-12-11; ICU=74.2; TRE=TRE 0.8.0 R_fixes (BSD); iconv=glibc 2.39; readline=8.2; BLAS=/opt/R-devel/lib/R/lib/libRblas.so; lapack=/usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.12.0; lapack_version=3.12.0]
[2025-04-03 00:08:11] [INFO]    [OmnipathR] Loaded packages: backports 1.5.0(2024-05-23); bit 4.6.0(2025-03-06); bit64 4.6.0-1(2025-01-16); blob 1.2.4(2023-03-17); cachem 1.1.0(2024-05-16); cellranger 1.1.0(2016-07-27); checkmate 2.3.2(2024-07-29); cli 3.6.4(2025-02-13); crayon 1.5.3(2024-06-20); curl 6.2.2(2025-03-24); DBI 1.2.3(2024-06-02); digest 0.6.37(2024-08-19); dplyr 1.1.4(2023-11-17); evaluate 1.0.3(2025-01-10); fastmap 1.2.0(2024-05-15); fs 1.6.5(2024-10-30); generics 0.1.3(2022-07-05); glue 1.8.0(2024-09-30); hms 1.1.3(2023-03-21); htmltools 0.5.8.1(2024-04-04); httr 1.4.7(2023-08-15); httr2 1.1.2(2025-03-26); igraph 2.1.4(2025-01-23); jsonlite 2.0.0(2025-03-27); knitr 1.50(2025-03-16); later 1.4.1(2024-11-27); lattice 0.22-6(2024-03-20); lifecycle 1.0.4(2023-11-07); logger 0.4.0(2024-10-22); lubridate 1.9.4(2024-12-08); magrittr 2.0.3(2022-03-30); Matrix 1.7-2(2025-01-23); memoise 2.0.1(2021-11-26); OmnipathR 3.15.12(2025-04-01); pillar 1.10.1(2025-01-07); pkgconfig 2.0.3(2019-09-22); prettyunits 1.2.0(2023-09-24); progress 1.2.3(2023-12-06); purrr 1.0.4(2025-02-05); R.methodsS3 1.8.2(2022-06-13); R.oo 1.27.0(2024-11-01); R.utils 2.13.0(2025-02-24); R6 2.6.1(2025-02-15); rappdirs 0.3.3(2021-01-31); Rcpp 1.0.14(2025-01-12); readr 2.1.5(2024-01-10); readxl 1.4.5(2025-03-07); rlang 1.1.5(2025-01-17); rmarkdown 2.29(2024-11-04); RSQLite 2.3.9(2024-12-03); rvest 1.0.4(2024-02-12); sessioninfo 1.2.3(2025-02-05); stringi 1.8.7(2025-03-27); stringr 1.5.1(2023-11-14); tibble 3.2.1(2023-03-20); tidyr 1.3.1(2024-01-24); tidyselect 1.2.1(2024-03-11); timechange 0.3.0(2024-01-18); tzdb 0.5.0(2025-03-15); vctrs 0.6.5(2023-12-01); withr 3.0.2(2024-10-28); wppi 1.15.0(2024-10-29); xfun 0.51(2025-02-19); XML 3.99-0.18(2025-01-01); xml2 1.3.8(2025-03-14); yaml 2.3.10(2024-07-26); zip 2.3.2(2025-02-01)
[2025-04-03 00:08:11] [INFO]    [OmnipathR] CURL: version: 8.5.0; headers: 8.5.0; ssl_version: OpenSSL/3.0.13; libz_version: 1.3; libssh_version: libssh/0.10.6/openssl/zlib; libidn_version: 2.3.7; host: x86_64-pc-linux-gnu; protocols: dict, file, ftp, ftps, gopher, gophers, http, https, imap, imaps, ldap, ldaps, mqtt, pop3, pop3s, rtmp, rtmpe, rtmps, rtmpt, rtmpte, rtmpts, rtsp, scp, sftp, smb, smbs, smtp, smtps, telnet, tftp; ipv6: TRUE; http2: TRUE; idn: TRUE; url_parser: TRUE
[2025-04-03 00:08:11] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2025-04-03 00:08:11] [TRACE]   [OmnipathR] Cache is at `/home/omnipath/.cache/OmnipathR`.
[2025-04-03 00:08:11] [TRACE]   [OmnipathR] Contains 1 files.
[2025-04-03 00:08:11] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2025-04-03 00:08:11] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2025-04-03 00:08:11] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-04-03 00:08:11] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/omnipath/.cache/OmnipathR`.
[2025-04-03 00:08:11] [TRACE]   [OmnipathR] Pandoc version: `3.1.3`.
[2025-04-03 00:08:11] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.5-3.21/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2025-04-03 00:08:11] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-04-03 00:08:11] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.5-3.21/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2025-04-03 00:08:11] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-04-03 00:08:11] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.5-3.21/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2025-04-03 00:08:11] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-04-03 00:08:11] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.5-3.21/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2025-04-03 00:08:11] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-04-03 00:08:11] [TRACE]   [OmnipathR] Cache locked: FALSE
Note: wrong number of arguments to '/' 
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
[2025-04-03 00:08:13] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2025-04-03 00:08:13] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-04-03 00:08:13] [INFO]    [OmnipathR] Initialized cache: `/home/omnipath/.cache/OmnipathR`.
[2025-04-03 00:08:13] [INFO]    [OmnipathR] Package `OmnipathR` packaged: 2025-04-01 23:14:37 UTC; omnipath
[2025-04-03 00:08:13] [INFO]    [OmnipathR] Package `OmnipathR` date/publication: NA
[2025-04-03 00:08:13] [INFO]    [OmnipathR] Package `OmnipathR` built: R 4.5.0; ; 2025-04-01 23:14:38 UTC; unix
[2025-04-03 00:08:13] [INFO]    [OmnipathR] Package `OmnipathR` version: 3.15.12
[2025-04-03 00:08:13] [INFO]    [OmnipathR] Package `OmnipathR` repository: NA
[2025-04-03 00:08:14] [INFO]    [OmnipathR] Session info: [version=R Under development (unstable) (2025-02-12 r87715); os=Ubuntu 24.04 LTS; system=x86_64, linux-gnu; ui=X11; language=en_GB; collate=C; ctype=en_GB.UTF-8; tz=Europe/Berlin; date=2025-04-03; pandoc=3.1.3 @ /usr/bin/ (via rmarkdown); quarto=NA]
[2025-04-03 00:08:14] [INFO]    [OmnipathR] External libraries: [cairo=1.18.0; cairoFT=2.13.2/2.15.0; pango=; png=1.6.43; jpeg=8.0; tiff=LIBTIFF, Version 4.5.1; tcl=8.6.14; curl=8.5.0; zlib=1.3; bzlib=1.0.8, 13-Jul-2019; xz=5.4.5; deflate=1.19; PCRE=10.42 2022-12-11; ICU=74.2; TRE=TRE 0.8.0 R_fixes (BSD); iconv=glibc 2.39; readline=8.2; BLAS=/opt/R-devel/lib/R/lib/libRblas.so; lapack=/usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.12.0; lapack_version=3.12.0]
[2025-04-03 00:08:14] [INFO]    [OmnipathR] Loaded packages: backports 1.5.0(2024-05-23); bit 4.6.0(2025-03-06); bit64 4.6.0-1(2025-01-16); blob 1.2.4(2023-03-17); cachem 1.1.0(2024-05-16); cellranger 1.1.0(2016-07-27); checkmate 2.3.2(2024-07-29); cli 3.6.4(2025-02-13); crayon 1.5.3(2024-06-20); curl 6.2.2(2025-03-24); DBI 1.2.3(2024-06-02); digest 0.6.37(2024-08-19); dplyr 1.1.4(2023-11-17); evaluate 1.0.3(2025-01-10); fastmap 1.2.0(2024-05-15); fs 1.6.5(2024-10-30); generics 0.1.3(2022-07-05); glue 1.8.0(2024-09-30); hms 1.1.3(2023-03-21); htmltools 0.5.8.1(2024-04-04); httr 1.4.7(2023-08-15); httr2 1.1.2(2025-03-26); igraph 2.1.4(2025-01-23); jsonlite 2.0.0(2025-03-27); knitr 1.50(2025-03-16); later 1.4.1(2024-11-27); lattice 0.22-6(2024-03-20); lifecycle 1.0.4(2023-11-07); logger 0.4.0(2024-10-22); lubridate 1.9.4(2024-12-08); magrittr 2.0.3(2022-03-30); Matrix 1.7-2(2025-01-23); memoise 2.0.1(2021-11-26); OmnipathR 3.15.12(2025-04-01); pillar 1.10.1(2025-01-07); pkgconfig 2.0.3(2019-09-22); prettyunits 1.2.0(2023-09-24); progress 1.2.3(2023-12-06); purrr 1.0.4(2025-02-05); R.methodsS3 1.8.2(2022-06-13); R.oo 1.27.0(2024-11-01); R.utils 2.13.0(2025-02-24); R6 2.6.1(2025-02-15); rappdirs 0.3.3(2021-01-31); Rcpp 1.0.14(2025-01-12); readr 2.1.5(2024-01-10); readxl 1.4.5(2025-03-07); rlang 1.1.5(2025-01-17); rmarkdown 2.29(2024-11-04); RSQLite 2.3.9(2024-12-03); rvest 1.0.4(2024-02-12); sessioninfo 1.2.3(2025-02-05); stringi 1.8.7(2025-03-27); stringr 1.5.1(2023-11-14); tibble 3.2.1(2023-03-20); tidyr 1.3.1(2024-01-24); tidyselect 1.2.1(2024-03-11); timechange 0.3.0(2024-01-18); tzdb 0.5.0(2025-03-15); vctrs 0.6.5(2023-12-01); withr 3.0.2(2024-10-28); wppi 1.15.0(2024-10-29); xfun 0.51(2025-02-19); XML 3.99-0.18(2025-01-01); xml2 1.3.8(2025-03-14); yaml 2.3.10(2024-07-26); zip 2.3.2(2025-02-01)
[2025-04-03 00:08:14] [INFO]    [OmnipathR] CURL: version: 8.5.0; headers: 8.5.0; ssl_version: OpenSSL/3.0.13; libz_version: 1.3; libssh_version: libssh/0.10.6/openssl/zlib; libidn_version: 2.3.7; host: x86_64-pc-linux-gnu; protocols: dict, file, ftp, ftps, gopher, gophers, http, https, imap, imaps, ldap, ldaps, mqtt, pop3, pop3s, rtmp, rtmpe, rtmps, rtmpt, rtmpte, rtmpts, rtsp, scp, sftp, smb, smbs, smtp, smtps, telnet, tftp; ipv6: TRUE; http2: TRUE; idn: TRUE; url_parser: TRUE
[2025-04-03 00:08:14] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2025-04-03 00:08:14] [TRACE]   [OmnipathR] Cache is at `/home/omnipath/.cache/OmnipathR`.
[2025-04-03 00:08:14] [TRACE]   [OmnipathR] Contains 1 files.
[2025-04-03 00:08:14] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2025-04-03 00:08:14] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2025-04-03 00:08:14] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-04-03 00:08:14] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/omnipath/.cache/OmnipathR`.
[2025-04-03 00:08:14] [TRACE]   [OmnipathR] Pandoc version: `3.1.3`.
[2025-04-03 00:08:14] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.5-3.21/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2025-04-03 00:08:14] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-04-03 00:08:14] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.5-3.21/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2025-04-03 00:08:14] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-04-03 00:08:14] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.5-3.21/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2025-04-03 00:08:14] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-04-03 00:08:14] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.5-3.21/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2025-04-03 00:08:14] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-04-03 00:08:14] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package can be loaded from final location
[2025-04-03 00:08:16] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2025-04-03 00:08:16] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-04-03 00:08:16] [INFO]    [OmnipathR] Initialized cache: `/home/omnipath/.cache/OmnipathR`.
[2025-04-03 00:08:16] [INFO]    [OmnipathR] Package `OmnipathR` packaged: 2025-04-01 23:14:37 UTC; omnipath
[2025-04-03 00:08:16] [INFO]    [OmnipathR] Package `OmnipathR` date/publication: NA
[2025-04-03 00:08:16] [INFO]    [OmnipathR] Package `OmnipathR` built: R 4.5.0; ; 2025-04-01 23:14:38 UTC; unix
[2025-04-03 00:08:16] [INFO]    [OmnipathR] Package `OmnipathR` version: 3.15.12
[2025-04-03 00:08:16] [INFO]    [OmnipathR] Package `OmnipathR` repository: NA
[2025-04-03 00:08:16] [INFO]    [OmnipathR] Session info: [version=R Under development (unstable) (2025-02-12 r87715); os=Ubuntu 24.04 LTS; system=x86_64, linux-gnu; ui=X11; language=en_GB; collate=C; ctype=en_GB.UTF-8; tz=Europe/Berlin; date=2025-04-03; pandoc=3.1.3 @ /usr/bin/ (via rmarkdown); quarto=NA]
[2025-04-03 00:08:16] [INFO]    [OmnipathR] External libraries: [cairo=1.18.0; cairoFT=2.13.2/2.15.0; pango=; png=1.6.43; jpeg=8.0; tiff=LIBTIFF, Version 4.5.1; tcl=8.6.14; curl=8.5.0; zlib=1.3; bzlib=1.0.8, 13-Jul-2019; xz=5.4.5; deflate=1.19; PCRE=10.42 2022-12-11; ICU=74.2; TRE=TRE 0.8.0 R_fixes (BSD); iconv=glibc 2.39; readline=8.2; BLAS=/opt/R-devel/lib/R/lib/libRblas.so; lapack=/usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.12.0; lapack_version=3.12.0]
[2025-04-03 00:08:16] [INFO]    [OmnipathR] Loaded packages: backports 1.5.0(2024-05-23); bit 4.6.0(2025-03-06); bit64 4.6.0-1(2025-01-16); blob 1.2.4(2023-03-17); cachem 1.1.0(2024-05-16); cellranger 1.1.0(2016-07-27); checkmate 2.3.2(2024-07-29); cli 3.6.4(2025-02-13); crayon 1.5.3(2024-06-20); curl 6.2.2(2025-03-24); DBI 1.2.3(2024-06-02); digest 0.6.37(2024-08-19); dplyr 1.1.4(2023-11-17); evaluate 1.0.3(2025-01-10); fastmap 1.2.0(2024-05-15); fs 1.6.5(2024-10-30); generics 0.1.3(2022-07-05); glue 1.8.0(2024-09-30); hms 1.1.3(2023-03-21); htmltools 0.5.8.1(2024-04-04); httr 1.4.7(2023-08-15); httr2 1.1.2(2025-03-26); igraph 2.1.4(2025-01-23); jsonlite 2.0.0(2025-03-27); knitr 1.50(2025-03-16); later 1.4.1(2024-11-27); lattice 0.22-6(2024-03-20); lifecycle 1.0.4(2023-11-07); logger 0.4.0(2024-10-22); lubridate 1.9.4(2024-12-08); magrittr 2.0.3(2022-03-30); Matrix 1.7-2(2025-01-23); memoise 2.0.1(2021-11-26); OmnipathR 3.15.12(2025-04-01); pillar 1.10.1(2025-01-07); pkgconfig 2.0.3(2019-09-22); prettyunits 1.2.0(2023-09-24); progress 1.2.3(2023-12-06); purrr 1.0.4(2025-02-05); R.methodsS3 1.8.2(2022-06-13); R.oo 1.27.0(2024-11-01); R.utils 2.13.0(2025-02-24); R6 2.6.1(2025-02-15); rappdirs 0.3.3(2021-01-31); Rcpp 1.0.14(2025-01-12); readr 2.1.5(2024-01-10); readxl 1.4.5(2025-03-07); rlang 1.1.5(2025-01-17); rmarkdown 2.29(2024-11-04); RSQLite 2.3.9(2024-12-03); rvest 1.0.4(2024-02-12); sessioninfo 1.2.3(2025-02-05); stringi 1.8.7(2025-03-27); stringr 1.5.1(2023-11-14); tibble 3.2.1(2023-03-20); tidyr 1.3.1(2024-01-24); tidyselect 1.2.1(2024-03-11); timechange 0.3.0(2024-01-18); tzdb 0.5.0(2025-03-15); vctrs 0.6.5(2023-12-01); withr 3.0.2(2024-10-28); wppi 1.15.0(2024-10-29); xfun 0.51(2025-02-19); XML 3.99-0.18(2025-01-01); xml2 1.3.8(2025-03-14); yaml 2.3.10(2024-07-26); zip 2.3.2(2025-02-01)
[2025-04-03 00:08:16] [INFO]    [OmnipathR] CURL: version: 8.5.0; headers: 8.5.0; ssl_version: OpenSSL/3.0.13; libz_version: 1.3; libssh_version: libssh/0.10.6/openssl/zlib; libidn_version: 2.3.7; host: x86_64-pc-linux-gnu; protocols: dict, file, ftp, ftps, gopher, gophers, http, https, imap, imaps, ldap, ldaps, mqtt, pop3, pop3s, rtmp, rtmpe, rtmps, rtmpt, rtmpte, rtmpts, rtsp, scp, sftp, smb, smbs, smtp, smtps, telnet, tftp; ipv6: TRUE; http2: TRUE; idn: TRUE; url_parser: TRUE
[2025-04-03 00:08:16] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2025-04-03 00:08:16] [TRACE]   [OmnipathR] Cache is at `/home/omnipath/.cache/OmnipathR`.
[2025-04-03 00:08:16] [TRACE]   [OmnipathR] Contains 1 files.
[2025-04-03 00:08:16] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2025-04-03 00:08:16] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2025-04-03 00:08:16] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-04-03 00:08:16] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/omnipath/.cache/OmnipathR`.
[2025-04-03 00:08:16] [TRACE]   [OmnipathR] Pandoc version: `3.1.3`.
[2025-04-03 00:08:16] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.5-3.21/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2025-04-03 00:08:16] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-04-03 00:08:16] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.5-3.21/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2025-04-03 00:08:16] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-04-03 00:08:16] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.5-3.21/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2025-04-03 00:08:16] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-04-03 00:08:16] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.5-3.21/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2025-04-03 00:08:16] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2025-04-03 00:08:16] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package keeps a record of temporary installation path
* DONE (wppi)
* installing *source* package ‘xfun’ ...
** this is package ‘xfun’ version ‘0.52’
** package ‘xfun’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c base64.c -o base64.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c init.c -o init.o
gcc -I"/opt/R-devel/lib/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -c rand_lcg.c -o rand_lcg.o
gcc -shared -L/usr/local/lib -o xfun.so base64.o init.o rand_lcg.o
installing to /home/omnipath/local/R/4.5-3.21/00LOCK-xfun/00new/xfun/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (xfun)

The downloaded source packages are in
	‘/tmp/RtmpkOFKGv/downloaded_packages’
Bioconductor version 3.21 (BiocManager 1.30.25), R Under development (unstable)
  (2025-02-12 r87715)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

Skipping 1 packages ahead of CRAN: xfun
[ Finished: 2025-04-03 00:08:23 CEST ]