[ Started: 2025-07-17 19:39:47 CEST ]
[ CellNOptR v1.54.0 for BioC-3.21 from https://git.bioconductor.org/packages/CellNOptR@RELEASE_3_21 (c2d1b49 2025-04-15 10:11:22) ]

* installing *source* package ‘CellNOptR’ ...
** this is package ‘CellNOptR’ version ‘1.54.0’
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
gcc -std=gnu2x -I"/usr/share/R/include" -DNDEBUG      -I./include  -fpic  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/build/r-base-wwoKA3/r-base-4.5.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/build/r-base-wwoKA3/r-base-4.5.1=/usr/src/r-base-4.5.1-1.2404.0 -Wdate-time -D_FORTIFY_SOURCE=3  -c simulatorT1.c -o simulatorT1.o
gcc -std=gnu2x -I"/usr/share/R/include" -DNDEBUG      -I./include  -fpic  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/build/r-base-wwoKA3/r-base-4.5.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/build/r-base-wwoKA3/r-base-4.5.1=/usr/src/r-base-4.5.1-1.2404.0 -Wdate-time -D_FORTIFY_SOURCE=3  -c simulatorTN.c -o simulatorTN.o
gcc -std=gnu2x -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -o CellNOptR.so simulatorT1.o simulatorTN.o -L/usr/lib/R/lib -lR
installing to /home/omnipath/local/R/4.5-3.21/00LOCK-CellNOptR/00new/CellNOptR/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CellNOptR)
[ Finished: 2025-07-17 19:39:58 CEST ]