[ Started: 2025-10-30 21:52:26 CET ]
[ CellNOptR v1.49.1 for BioC-3.22 from https://github.com/saezlab/CellNOptR@master (7001050 2024-04-11 11:28:56) ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.5-3.22"
[3] "/home/omnipath/local/R/4.5"      "/usr/lib/R/library"             
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.22 (BiocManager 1.30.26), R 4.5.1 (2025-06-13)
Old packages: 'airway', 'bcellViper'
trying URL 'https://bioconductor.org/packages/3.22/data/experiment/src/contrib/airway_1.30.0.tar.gz'
trying URL 'https://bioconductor.org/packages/3.22/data/experiment/src/contrib/bcellViper_1.46.0.tar.gz'
* installing *source* package ‘airway’ ...
** this is package ‘airway’ version ‘1.30.0’
** using staged installation
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (airway)
* installing *source* package ‘bcellViper’ ...
** this is package ‘bcellViper’ version ‘1.46.0’
** using staged installation
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bcellViper)

The downloaded source packages are in
	‘/tmp/RtmpAT62bT/downloaded_packages’
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.22 (BiocManager 1.30.26), R 4.5.1 (2025-06-13)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

Skipping 1 packages ahead of CRAN: xfun
[ Finished: 2025-10-30 21:52:49 CET ]