[ Started: 2023-07-12 18:29:27 CEST ]
[ cosmosR v1.5.2 for BioC-3.16 from https://github.com/saezlab/cosmosR@master ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.2-3.16"
[3] "/home/omnipath/local/R/4.2"      "/usr/lib/R/library"             
also installing the dependency ‘nloptr’

trying URL 'https://cran.uni-muenster.de/src/contrib/nloptr_2.0.3.tar.gz'
Content type 'application/x-gzip' length 2219877 bytes (2.1 MB)
==================================================
downloaded 2.1 MB

trying URL 'https://cran.uni-muenster.de/src/contrib/dbplyr_2.3.3.tar.gz'
Content type 'application/x-gzip' length 723072 bytes (706 KB)
==================================================
downloaded 706 KB

trying URL 'https://cran.uni-muenster.de/src/contrib/digest_0.6.33.tar.gz'
Content type 'application/x-gzip' length 177801 bytes (173 KB)
==================================================
downloaded 173 KB

trying URL 'https://cran.uni-muenster.de/src/contrib/KernSmooth_2.23-22.tar.gz'
Content type 'application/x-gzip' length 25996 bytes (25 KB)
==================================================
downloaded 25 KB

trying URL 'https://cran.uni-muenster.de/src/contrib/lme4_1.1-34.tar.gz'
Content type 'application/x-gzip' length 2948976 bytes (2.8 MB)
==================================================
downloaded 2.8 MB

trying URL 'https://cran.uni-muenster.de/src/contrib/Matrix_1.6-0.tar.gz'
Content type 'application/x-gzip' length 2058479 bytes (2.0 MB)
==================================================
downloaded 2.0 MB

trying URL 'https://cran.uni-muenster.de/src/contrib/MatrixModels_0.5-2.tar.gz'
Content type 'application/x-gzip' length 24659 bytes (24 KB)
==================================================
downloaded 24 KB

trying URL 'https://cran.uni-muenster.de/src/contrib/mgcv_1.9-0.tar.gz'
Content type 'application/x-gzip' length 1112050 bytes (1.1 MB)
==================================================
downloaded 1.1 MB

trying URL 'https://cran.uni-muenster.de/src/contrib/pkgload_1.3.2.1.tar.gz'
Content type 'application/x-gzip' length 76728 bytes (74 KB)
==================================================
downloaded 74 KB

trying URL 'https://cran.uni-muenster.de/src/contrib/pROC_1.18.4.tar.gz'
Content type 'application/x-gzip' length 439404 bytes (429 KB)
==
downloaded 23 KB

Error in download.file(url, destfile, method, mode = "wb", ...) : 
  download from 'https://cran.uni-muenster.de/src/contrib/pROC_1.18.4.tar.gz' failed
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
  downloaded length 23949 != reported length 439404
2: In download.file(url, destfile, method, mode = "wb", ...) :
  URL 'https://cran.uni-muenster.de/src/contrib/pROC_1.18.4.tar.gz': status was 'Failed writing received data to disk/application'
Warning in download.packages(pkgs, destdir = tmpd, available = available,  :
  download of package ‘pROC’ failed
trying URL 'https://cran.uni-muenster.de/src/contrib/Rcpp_1.0.11.tar.gz'
Content type 'application/x-gzip' length 2994004 bytes (2.9 MB)

downloaded 7947 bytes

Error in download.file(url, destfile, method, mode = "wb", ...) : 
  download from 'https://cran.uni-muenster.de/src/contrib/Rcpp_1.0.11.tar.gz' failed
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
  downloaded length 7947 != reported length 2994004
2: In download.file(url, destfile, method, mode = "wb", ...) :
  URL 'https://cran.uni-muenster.de/src/contrib/Rcpp_1.0.11.tar.gz': status was 'Failed writing received data to disk/application'
Warning in download.packages(pkgs, destdir = tmpd, available = available,  :
  download of package ‘Rcpp’ failed
trying URL 'https://cran.uni-muenster.de/src/contrib/readxl_1.4.3.tar.gz'
Content type 'application/x-gzip' length 2093488 bytes (2.0 MB)

downloaded 7947 bytes

Error in download.file(url, destfile, method, mode = "wb", ...) : 
  download from 'https://cran.uni-muenster.de/src/contrib/readxl_1.4.3.tar.gz' failed
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
  downloaded length 7947 != reported length 2093488
2: In download.file(url, destfile, method, mode = "wb", ...) :
  URL 'https://cran.uni-muenster.de/src/contrib/readxl_1.4.3.tar.gz': status was 'Failed writing received data to disk/application'
Warning in download.packages(pkgs, destdir = tmpd, available = available,  :
  download of package ‘readxl’ failed
trying URL 'https://cran.uni-muenster.de/src/contrib/rstudioapi_0.15.0.tar.gz'
Content type 'application/x-gzip' length 115689 bytes (112 KB)
===
downloaded 7949 bytes

Error in download.file(url, destfile, method, mode = "wb", ...) : 
  download from 'https://cran.uni-muenster.de/src/contrib/rstudioapi_0.15.0.tar.gz' failed
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
  downloaded length 7949 != reported length 115689
2: In download.file(url, destfile, method, mode = "wb", ...) :
  URL 'https://cran.uni-muenster.de/src/contrib/rstudioapi_0.15.0.tar.gz': status was 'Failed writing received data to disk/application'
Warning in download.packages(pkgs, destdir = tmpd, available = available,  :
  download of package ‘rstudioapi’ failed
trying URL 'https://cran.uni-muenster.de/src/contrib/shiny_1.7.4.1.tar.gz'
Content type 'application/x-gzip' length 2476876 bytes (2.4 MB)

downloaded 7947 bytes

Error in download.file(url, destfile, method, mode = "wb", ...) : 
  download from 'https://cran.uni-muenster.de/src/contrib/shiny_1.7.4.1.tar.gz' failed
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
  downloaded length 7947 != reported length 2476876
2: In download.file(url, destfile, method, mode = "wb", ...) :
  URL 'https://cran.uni-muenster.de/src/contrib/shiny_1.7.4.1.tar.gz': status was 'Failed writing received data to disk/application'
Warning in download.packages(pkgs, destdir = tmpd, available = available,  :
  download of package ‘shiny’ failed
trying URL 'https://cran.uni-muenster.de/src/contrib/spatstat.geom_3.2-2.tar.gz'
Content type 'application/x-gzip' length 767955 bytes (749 KB)

downloaded 7949 bytes

Error in download.file(url, destfile, method, mode = "wb", ...) : 
  download from 'https://cran.uni-muenster.de/src/contrib/spatstat.geom_3.2-2.tar.gz' failed
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
  downloaded length 7949 != reported length 767955
2: In download.file(url, destfile, method, mode = "wb", ...) :
  URL 'https://cran.uni-muenster.de/src/contrib/spatstat.geom_3.2-2.tar.gz': status was 'Failed writing received data to disk/application'
Warning in download.packages(pkgs, destdir = tmpd, available = available,  :
  download of package ‘spatstat.geom’ failed
trying URL 'https://cran.uni-muenster.de/src/contrib/testthat_3.1.10.tar.gz'
Content type 'application/x-gzip' length 737357 bytes (720 KB)

downloaded 7949 bytes

Error in download.file(url, destfile, method, mode = "wb", ...) : 
  download from 'https://cran.uni-muenster.de/src/contrib/testthat_3.1.10.tar.gz' failed
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
  downloaded length 7949 != reported length 737357
2: In download.file(url, destfile, method, mode = "wb", ...) :
  URL 'https://cran.uni-muenster.de/src/contrib/testthat_3.1.10.tar.gz': status was 'Failed writing received data to disk/application'
Warning in download.packages(pkgs, destdir = tmpd, available = available,  :
  download of package ‘testthat’ failed
trying URL 'https://cran.uni-muenster.de/src/contrib/usethis_2.2.2.tar.gz'
Content type 'application/x-gzip' length 371065 bytes (362 KB)
=
downloaded 7949 bytes

Error in download.file(url, destfile, method, mode = "wb", ...) : 
  download from 'https://cran.uni-muenster.de/src/contrib/usethis_2.2.2.tar.gz' failed
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
  downloaded length 7949 != reported length 371065
2: In download.file(url, destfile, method, mode = "wb", ...) :
  URL 'https://cran.uni-muenster.de/src/contrib/usethis_2.2.2.tar.gz': status was 'Failed writing received data to disk/application'
Warning in download.packages(pkgs, destdir = tmpd, available = available,  :
  download of package ‘usethis’ failed
trying URL 'https://cran.uni-muenster.de/src/contrib/xml2_1.3.5.tar.gz'
Content type 'application/x-gzip' length 272664 bytes (266 KB)
=
downloaded 7949 bytes

Error in download.file(url, destfile, method, mode = "wb", ...) : 
  download from 'https://cran.uni-muenster.de/src/contrib/xml2_1.3.5.tar.gz' failed
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
  downloaded length 7949 != reported length 272664
2: In download.file(url, destfile, method, mode = "wb", ...) :
  URL 'https://cran.uni-muenster.de/src/contrib/xml2_1.3.5.tar.gz': status was 'Failed writing received data to disk/application'
Warning in download.packages(pkgs, destdir = tmpd, available = available,  :
  download of package ‘xml2’ failed
Error in install.packages(update[instlib == l, "Package"], l, contriburl = contriburl,  : 
  unable to create temporary directory ‘/tmp/RtmpmrhcOJ/file1340b42db7c336’
Calls: update.packages -> install.packages
In addition: Warning message:
In dir.create(tmpd2) :
  cannot create dir '/tmp/RtmpmrhcOJ/file1340b42db7c336', reason 'No space left on device'
Execution halted
[ Finished: 2023-07-12 18:29:32 CEST ]