[ Started: 2022-11-03 01:25:22 CET ]
[ cosmosR v1.5.1 for BioC-3.17 from https://github.com/saezlab/cosmosR@master ]

Hit:1 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ InRelease
Hit:2 http://de.archive.ubuntu.com/ubuntu focal InRelease
Hit:3 http://de.archive.ubuntu.com/ubuntu focal-updates InRelease
Get:4 http://security.ubuntu.com/ubuntu focal-security InRelease [114 kB]
Hit:5 http://ppa.launchpad.net/deadsnakes/ppa/ubuntu focal InRelease
Hit:6 http://de.archive.ubuntu.com/ubuntu focal-backports InRelease
Fetched 114 kB in 1s (93.2 kB/s)
Reading package lists...
[1] "Libraries: "                     "/home/omnipath/local/R/4.2-3.17"
[3] "/home/omnipath/local/R/4.2"      "/usr/lib/R/library"             
Warning message:
package ‘BiocCheck’ is not available for this version of R

A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages 
Reading package lists...
Building dependency tree...
Reading state information...
libglpk-dev is already the newest version (4.65-2).
0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
libgmp3-dev is already the newest version (2:6.2.0+dfsg-4ubuntu0.1).
0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
libxml2-dev is already the newest version (2.9.10+dfsg-5ubuntu0.20.04.4).
0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
libicu-dev is already the newest version (66.1-2ubuntu2.1).
0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
make is already the newest version (4.2.1-1.2).
0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade.
Reading package lists...
Building dependency tree...
Reading state information...
pandoc is already the newest version (2.5-3build2).
0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade.
apt-get install -y libglpk-dev apt-get install -y libgmp3-dev 
                             0                              0 
apt-get install -y libxml2-dev  apt-get install -y libicu-dev 
                             0                              0 
       apt-get install -y make      apt-get install -y pandoc 
                             0                              0 
[ Finished: 2022-11-03 01:25:29 CET ]