[ Started: 2023-04-12 23:48:48 CEST ]
[ cosmosR v1.5.2 for BioC-3.17 from https://github.com/saezlab/cosmosR@master ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.3-3.17"
[3] "/home/omnipath/local/R/4.3"      "/opt/R-beta/lib/R/library"      
Warning: unable to access index for repository https://cran.uni-muenster.de/src/contrib:
  cannot open URL 'https://cran.uni-muenster.de/src/contrib/PACKAGES'
Warning: unable to access index for repository https://cran.uni-muenster.de/src/contrib:
  cannot open URL 'https://cran.uni-muenster.de/src/contrib/PACKAGES'
Bioconductor version 3.17 (BiocManager 1.30.20), R 4.3.0 beta (2023-04-08
  r84203)
Bioconductor version 3.17 (BiocManager 1.30.20), R 4.3.0 beta (2023-04-08
  r84203)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

Skipping 46 packages not available: cpp11, snow, futile.logger, BH, scales, fastmatch, cowplot, ggplot2, data.table, Rcpp, RCurl, crayon, png, httr, RSQLite, DBI, xtable, XML, e1071, mixtools, visNetwork, shinydashboard, shinyjs, htmlwidgets, DT, shiny, relations, igraph, gplots, withr, tidyselect, tidyr, tibble, stringr, rlang, purrr, magrittr, dplyr, broom, rmarkdown, rjson, lpSolve, readr, knitr, testthat, progress
[ Finished: 2023-04-12 23:48:53 CEST ]