[ Started: 2023-04-22 01:06:55 CEST ]
[ cosmosR v1.5.2 for BioC-3.17 from https://github.com/saezlab/cosmosR@master ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.3-3.17"
[3] "/home/omnipath/local/R/4.3"      "/opt/R-beta/lib/R/library"      
Warning: unable to access index for repository https://cran.uni-muenster.de/src/contrib:
  cannot open URL 'https://cran.uni-muenster.de/src/contrib/PACKAGES'
Warning: unable to access index for repository https://cran.uni-muenster.de/src/contrib:
  cannot open URL 'https://cran.uni-muenster.de/src/contrib/PACKAGES'
Bioconductor version 3.17 (BiocManager 1.30.20), R 4.3.0 RC (2023-04-13 r84266)
Bioconductor version 3.17 (BiocManager 1.30.20), R 4.3.0 RC (2023-04-13 r84266)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 
decoupleR (1ae54b120... -> 3d343dd61...) [GitHub]
Skipping 46 packages not available: cpp11, snow, futile.logger, BH, scales, fastmatch, cowplot, ggplot2, data.table, Rcpp, RCurl, crayon, png, httr, RSQLite, DBI, xtable, XML, e1071, mixtools, visNetwork, shinydashboard, shinyjs, htmlwidgets, DT, shiny, relations, igraph, gplots, withr, tidyselect, tidyr, tibble, stringr, rlang, purrr, magrittr, dplyr, broom, rmarkdown, rjson, lpSolve, readr, knitr, testthat, progress
Downloading GitHub repo saezlab/decoupleR@HEAD

Skipping 10 packages not available: withr, tidyselect, tidyr, tibble, stringr, rlang, purrr, magrittr, dplyr, broom
── R CMD build ─────────────────────────────────────────────────────────────────
* checking for file ‘/tmp/RtmpfbGXD8/remotes3516a120fea62c/saezlab-decoupleR-3d343dd/DESCRIPTION’ ... OK
* preparing ‘decoupleR’:
* checking DESCRIPTION meta-information ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
Omitted ‘LazyData’ from DESCRIPTION
* building ‘decoupleR_2.5.0.tar.gz’

* installing *source* package ‘decoupleR’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (decoupleR)
[ Finished: 2023-04-22 01:07:07 CEST ]