[ Started: 2024-02-22 16:58:53 CET ]
[ cosmosR v1.5.2 for BioC-3.17 from https://github.com/saezlab/cosmosR@master ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.3-3.17"
[3] "/home/omnipath/local/R/4.3"      "/usr/lib/R/library"             
Bioconductor version '3.17' is out-of-date; the current release version '3.18'
  is available with R version '4.3'; see https://bioconductor.org/install
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Warning: unable to access index for repository https://bioconductor.org/packages/3.17/bioc/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.17/bioc/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.17/data/annotation/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.17/data/experiment/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.17/workflows/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.17/workflows/src/contrib/PACKAGES'
Bioconductor version 3.17 (BiocManager 1.30.22), R 4.3.1 (2023-06-16)
Warning: unable to access index for repository https://bioconductor.org/packages/3.17/bioc/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.17/bioc/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.17/data/annotation/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.17/data/experiment/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.17/workflows/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.17/workflows/src/contrib/PACKAGES'
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Warning: unable to access index for repository https://bioconductor.org/packages/3.17/bioc/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.17/bioc/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.17/data/annotation/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.17/data/experiment/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.17/workflows/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.17/workflows/src/contrib/PACKAGES'
Bioconductor version 3.17 (BiocManager 1.30.22), R 4.3.1 (2023-06-16)
Warning: unable to access index for repository https://bioconductor.org/packages/3.17/bioc/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.17/bioc/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.17/data/annotation/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.17/data/experiment/src/contrib/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.17/workflows/src/contrib:
  cannot open URL 'https://bioconductor.org/packages/3.17/workflows/src/contrib/PACKAGES'
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

[ Finished: 2024-02-22 17:02:31 CET ]