[ Started: 2024-03-22 18:36:44 CET ]
[ cosmosR v1.5.2 for BioC-3.18 from https://github.com/saezlab/cosmosR@master (c5e29e0 2023-09-15 11:13:06) ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.3-3.18"
[3] "/home/omnipath/local/R/4.3"      "/usr/lib/R/library"             
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.18 (BiocManager 1.30.22), R 4.3.3 (2024-02-29)
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.18 (BiocManager 1.30.22), R 4.3.3 (2024-02-29)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 
decoupleR (ea34746e8... -> cb3cdea89...) [GitHub]
Skipping 23 packages ahead of CRAN: bslib, BiocParallel, limma, BiocGenerics, zlibbioc, GenomeInfoDbData, GenomeInfoDb, XVector, Biostrings, KEGGREST, S4Vectors, IRanges, Biobase, AnnotationDbi, fgsea, marray, graph, annotate, bcellViper, piano, GSEABase, dorothea, CARNIVAL
Downloading GitHub repo saezlab/decoupleR@HEAD

── R CMD build ─────────────────────────────────────────────────────────────────
* checking for file ‘/tmp/RtmplHAKaA/remotes1242fc5fff646a/saezlab-decoupleR-cb3cdea/DESCRIPTION’ ... OK
* preparing ‘decoupleR’:
* checking DESCRIPTION meta-information ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
Omitted ‘LazyData’ from DESCRIPTION
* building ‘decoupleR_2.9.2.tar.gz’

* installing *source* package ‘decoupleR’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (decoupleR)
[ Finished: 2024-03-22 18:37:24 CET ]