[ Started: 2024-05-14 16:04:37 CEST ]
[ cosmosR v1.5.2 for BioC-3.18 from https://github.com/saezlab/cosmosR@master (c5e29e0 2023-09-15 11:13:06) ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.3-3.18"
[3] "/home/omnipath/local/R/4.3"      "/usr/lib/R/library"             
Bioconductor version '3.18' is out-of-date; the current release version '3.19'
  is available with R version '4.4'; see https://bioconductor.org/install
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.18 (BiocManager 1.30.23), R 4.3.3 (2024-02-29)
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.18 (BiocManager 1.30.23), R 4.3.3 (2024-02-29)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

Skipping 23 packages ahead of CRAN: BiocParallel, limma, BiocGenerics, zlibbioc, GenomeInfoDbData, GenomeInfoDb, XVector, Biostrings, KEGGREST, S4Vectors, IRanges, Biobase, AnnotationDbi, fgsea, marray, graph, annotate, decoupleR, bcellViper, piano, GSEABase, dorothea, CARNIVAL
[ Finished: 2024-05-14 16:04:49 CEST ]