[ Started: 2024-04-29 16:20:22 CEST ]
[ cosmosR v1.5.2 for BioC-3.19 from https://github.com/saezlab/cosmosR@master (c5e29e0 2023-09-15 11:13:06) ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.4-3.19"
[3] "/home/omnipath/local/R/4.4"      "/opt/R-alpha/lib/R/library"     
Warning message:
package ‘remotes’ was built under R version 4.5.0 
Warning message:
package ‘BiocManager’ was built under R version 4.5.0 
Bioconductor version 3.19 (BiocManager 1.30.22), R 4.4.0 alpha (2024-04-04
  r86334)
Bioconductor version 3.19 (BiocManager 1.30.22), R 4.4.0 alpha (2024-04-04
  r86334)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 
decoupleR (6ec5e9283... -> 8716d1a7f...) [GitHub]
Skipping 22 packages ahead of CRAN: BiocParallel, limma, BiocGenerics, zlibbioc, GenomeInfoDbData, GenomeInfoDb, XVector, Biostrings, KEGGREST, S4Vectors, IRanges, Biobase, AnnotationDbi, fgsea, marray, graph, annotate, bcellViper, piano, GSEABase, dorothea, CARNIVAL
Downloading GitHub repo saezlab/decoupleR@HEAD

Skipping 1 packages ahead of CRAN: BiocParallel
── R CMD build ─────────────────────────────────────────────────────────────────
* checking for file ‘/tmp/RtmpHNLrX4/remotes24ca6756d4e91/saezlab-decoupleR-8716d1a/DESCRIPTION’ ... OK
* preparing ‘decoupleR’:
* checking DESCRIPTION meta-information ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
Omitted ‘LazyData’ from DESCRIPTION
* building ‘decoupleR_2.9.7.tar.gz’

* installing *source* package ‘decoupleR’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (decoupleR)
[ Finished: 2024-04-29 16:20:35 CEST ]