[ Started: 2024-05-15 16:11:16 CEST ]
[ cosmosR v1.5.2 for BioC-3.19 from https://github.com/saezlab/cosmosR@master (c5e29e0 2023-09-15 11:13:06) ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.4-3.19"
[3] "/home/omnipath/local/R/4.4"      "/opt/R-alpha/lib/R/library"     
Warning message:
package ‘remotes’ was built under R version 4.5.0 
Bioconductor version 3.19 (BiocManager 1.30.23), R 4.4.0 alpha (2024-04-04
  r86334)
Old packages: 'dqrng'
trying URL 'https://cloud.r-project.org/src/contrib/dqrng_0.4.0.tar.gz'
Content type 'application/x-gzip' length 262628 bytes (256 KB)
==================================================
downloaded 256 KB

* installing *source* package ‘dqrng’ ...
** package ‘dqrng’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
g++ -std=gnu++17 -I"/opt/R-alpha/lib/R/include" -DNDEBUG -I../inst/include -DSTRICT_R_HEADERS -I'/home/omnipath/local/R/4.4-3.19/Rcpp/include' -I'/home/omnipath/local/R/4.4-3.19/BH/include' -I'/home/omnipath/local/R/4.4-3.19/sitmo/include' -I/usr/local/include    -fpic  -g -O2   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/opt/R-alpha/lib/R/include" -DNDEBUG -I../inst/include -DSTRICT_R_HEADERS -I'/home/omnipath/local/R/4.4-3.19/Rcpp/include' -I'/home/omnipath/local/R/4.4-3.19/BH/include' -I'/home/omnipath/local/R/4.4-3.19/sitmo/include' -I/usr/local/include    -fpic  -g -O2   -c dqrng.cpp -o dqrng.o
g++ -std=gnu++17 -I"/opt/R-alpha/lib/R/include" -DNDEBUG -I../inst/include -DSTRICT_R_HEADERS -I'/home/omnipath/local/R/4.4-3.19/Rcpp/include' -I'/home/omnipath/local/R/4.4-3.19/BH/include' -I'/home/omnipath/local/R/4.4-3.19/sitmo/include' -I/usr/local/include    -fpic  -g -O2   -c generateSeedVectors.cpp -o generateSeedVectors.o
g++ -std=gnu++17 -shared -L/usr/local/lib -o dqrng.so RcppExports.o dqrng.o generateSeedVectors.o
installing to /home/omnipath/local/R/4.4-3.19/00LOCK-dqrng/00new/dqrng/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (dqrng)

The downloaded source packages are in
	‘/tmp/RtmpwMtk0q/downloaded_packages’
Bioconductor version 3.19 (BiocManager 1.30.23), R 4.4.0 alpha (2024-04-04
  r86334)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

Skipping 24 packages ahead of CRAN: xfun, fastmap, BiocParallel, limma, BiocGenerics, zlibbioc, GenomeInfoDbData, GenomeInfoDb, XVector, Biostrings, KEGGREST, S4Vectors, IRanges, Biobase, AnnotationDbi, fgsea, marray, graph, annotate, bcellViper, piano, GSEABase, dorothea, CARNIVAL
[ Finished: 2024-05-15 16:11:36 CEST ]