[ Started: 2025-10-13 20:54:46 CEST ]
[ cosmosR v1.9.1 for BioC-3.22 from https://github.com/saezlab/cosmosR@master (5a38475 2025-07-06 10:04:33) ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.5-3.22"
[3] "/home/omnipath/local/R/4.5"      "/usr/lib/R/library"             
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.22 (BiocManager 1.30.26), R 4.5.1 (2025-06-13)
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.22 (BiocManager 1.30.26), R 4.5.1 (2025-06-13)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

Skipping 23 packages ahead of CRAN: BiocParallel, BiocGenerics, GenomeInfoDbData, UCSC.utils, GenomeInfoDb, XVector, Biostrings, KEGGREST, S4Vectors, IRanges, Biobase, AnnotationDbi, fgsea, marray, igraph, graph, annotate, decoupleR, bcellViper, piano, GSEABase, dorothea, CARNIVAL
[ Finished: 2025-10-13 20:54:54 CEST ]