[ Started: 2026-04-18 21:43:26 CEST ]
[ cosmosR v1.18.1 for BioC-3.22 from https://git.bioconductor.org/packages/cosmosR@RELEASE_3_22 (80dd9b7 2026-02-10 12:59:12) ]

Loading required package: BiocCheck
── Installing cosmosR ──────────────────────────────────────────────────────────
✔ Package installed successfully
── cosmosR session metadata ────────────────────────────────────────────────────
→ sourceDir: /tmp/RtmpHEw3os/file2b892a55b4a979/cosmosR
→ BiocVersion: 3.22
→ Package: cosmosR
→ PackageVersion: 1.18.1
→ BiocCheckDir: /mnt/disk0/build/bioc-check/cosmosr/bioc-3.22/2026-04-18_2131/cosmosR/cosmosR.BiocCheck
→ BiocCheckVersion: 1.46.3
→ sourceDir: /tmp/RtmpHEw3os/file2b892a55b4a979/cosmosR
→ installDir: /tmp/RtmpHEw3os/file2b892a2e42c928
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on cosmosR ────────────────────────────────────────────────
* Checking for deprecated package usage...
Error while performing HEAD request.
   Proceeding without cache information.
Error in if (identical(nrow(bquery), 1L) && bfcneedsupdate(bfc, bquery[["rid"]])) bfcdownload(x = bfc,  : 
  missing value where TRUE/FALSE needed
Calls: BiocCheck ... getAllDeprecatedPkgs -> get_deprecated_status -> get_status_file_cache
Execution halted
[ Finished: 2026-04-18 21:44:03 CEST ]