[ Started: 2026-03-30 21:19:19 CEST ]
[ cosmosR v1.19.1 for BioC-3.23 from https://github.com/saezlab/cosmosR@master (ffb7361 2026-03-17 16:51:31) ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.6-3.23"
[3] "/home/omnipath/local/R/4.6"      "/opt/R-devel/lib/R/library"     
Bioconductor version 3.23 (BiocManager 1.30.27), R Under development (unstable)
  (2026-03-23 r89685)
Old packages: 'CellNOptR'
trying URL 'https://bioconductor.org/packages/3.23/bioc/src/contrib/CellNOptR_1.57.0.tar.gz'
Content type 'application/x-gzip' length 3710341 bytes (3.5 MB)
==================================================
downloaded 3.5 MB

* installing *source* package ‘CellNOptR’ ...
** this is package ‘CellNOptR’ version ‘1.57.0’
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0’
gcc -std=gnu2x -I"/opt/R-devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -I./include  -fpic  -g -O2  -c simulatorT1.c -o simulatorT1.o
gcc -std=gnu2x -I"/opt/R-devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -I./include  -fpic  -g -O2  -c simulatorTN.c -o simulatorTN.o
gcc -std=gnu2x -shared -L/usr/local/lib -o CellNOptR.so simulatorT1.o simulatorTN.o
installing to /home/omnipath/local/R/4.6-3.23/00LOCK-CellNOptR/00new/CellNOptR/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CellNOptR)

The downloaded source packages are in
	‘/tmp/RtmpTB4OFr/downloaded_packages’
Bioconductor version 3.23 (BiocManager 1.30.27), R Under development (unstable)
  (2026-03-23 r89685)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

[ Finished: 2026-03-30 21:19:38 CEST ]