[ Started: 2026-10-15 18:29:56 CEST ]
[ cosmosR v1.21.2 for BioC-3.24 from https://github.com/saezlab/cosmosR@master (b2ed195 2026-09-03 10:31:50) ]
[ R version 4.6.1 Patched (2026-10-12 r90666) -- "Happy Hop" at /opt/R-4.6-patched/bin ]

[1] "Libraries: "                      "/home/omnipath/local/R/4.6-3.24" 
[3] "/home/omnipath/local/R/4.6"       "/opt/R-4.6-patched/lib/R/library"
Bioconductor version 3.24 (BiocManager 1.30.27), R 4.6.1 Patched (2026-10-12
  r90666)
Old packages: 'CellNOptR'
trying URL 'https://bioconductor.org/packages/3.24/bioc/src/contrib/CellNOptR_1.59.0.tar.gz'
Content type 'application/gzip' length 3715989 bytes (3.5 MB)
==================================================
downloaded 3.5 MB

* installing *source* package ‘CellNOptR’ ...
** this is package ‘CellNOptR’ version ‘1.59.0’
** package ‘CellNOptR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0’
gcc -std=gnu2x -I"/opt/R-4.6-patched/lib/R/include" -DNDEBUG   -I/usr/local/include   -I./include  -fpic  -g -O2  -c simulatorT1.c -o simulatorT1.o
gcc -std=gnu2x -I"/opt/R-4.6-patched/lib/R/include" -DNDEBUG   -I/usr/local/include   -I./include  -fpic  -g -O2  -c simulatorTN.c -o simulatorTN.o
gcc -std=gnu2x -shared -L/opt/R-4.6-patched/lib/R/lib -L/usr/local/lib -o CellNOptR.so simulatorT1.o simulatorTN.o -L/opt/R-4.6-patched/lib/R/lib -lR
installing to /home/omnipath/local/R/4.6-3.24/00LOCK-CellNOptR/00new/CellNOptR/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CellNOptR)

The downloaded source packages are in
	‘/tmp/Rtmpl2GMsb/downloaded_packages’
Bioconductor version 3.24 (BiocManager 1.30.27), R 4.6.1 Patched (2026-10-12
  r90666)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

[ Finished: 2026-10-15 18:30:18 CEST ]