[ Started: 2022-12-04 01:12:43 CET ]
[ decoupleR v2.3.2 for BioC-3.16 from https://github.com/saezlab/decoupleR@master ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.2-3.16"
[3] "/home/omnipath/local/R/4.2"      "/usr/lib/R/library"             
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details

replacement repositories:
    CRAN: https://cloud.r-project.org

Bioconductor version 3.16 (BiocManager 1.30.19), R 4.2.1 (2022-06-23)
OmnipathR (2a734a15e... -> efb50d29c...) [GitHub]
Downloading GitHub repo saezlab/OmnipathR@HEAD

── R CMD build ─────────────────────────────────────────────────────────────────
* checking for file ‘/tmp/Rtmp3eLe80/remotes1be9befb90ce4/saezlab-OmnipathR-efb50d2/DESCRIPTION’ ... OK
* preparing ‘OmnipathR’:
* checking DESCRIPTION meta-information ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* looking to see if a ‘data/datalist’ file should be added
* building ‘OmnipathR_3.5.25.tar.gz’

* installing *source* package ‘OmnipathR’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
[2022-12-04 01:12:59] [INFO]    [OmnipathR] Setting up new cache directory `/home/omnipath/.cache/OmnipathR`.
[2022-12-04 01:12:59] [INFO]    [OmnipathR] Initialized cache: `/home/omnipath/.cache/OmnipathR`.
[2022-12-04 01:12:59] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2022-12-04 01:12:59] [TRACE]   [OmnipathR] Cache is at `/home/omnipath/.cache/OmnipathR`.
[2022-12-04 01:12:59] [TRACE]   [OmnipathR] Contains 1 files.
[2022-12-04 01:12:59] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2022-12-04 01:12:59] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/omnipath/.cache/OmnipathR`.
[2022-12-04 01:12:59] [TRACE]   [OmnipathR] Pandoc version: `2.5`.
[2022-12-04 01:12:59] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package can be loaded from final location
[2022-12-04 01:13:00] [INFO]    [OmnipathR] Initialized cache: `/home/omnipath/.cache/OmnipathR`.
[2022-12-04 01:13:00] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2022-12-04 01:13:00] [TRACE]   [OmnipathR] Cache is at `/home/omnipath/.cache/OmnipathR`.
[2022-12-04 01:13:00] [TRACE]   [OmnipathR] Contains 1 files.
[2022-12-04 01:13:00] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2022-12-04 01:13:00] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/omnipath/.cache/OmnipathR`.
[2022-12-04 01:13:00] [TRACE]   [OmnipathR] Pandoc version: `2.5`.
[2022-12-04 01:13:00] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package keeps a record of temporary installation path
* DONE (OmnipathR)
[ Finished: 2022-12-04 01:13:01 CET ]