[ Started: 2023-04-30 00:00:16 CEST ]
[ decoupleR v2.5.0 for BioC-3.16 from https://github.com/saezlab/decoupleR@master ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.2-3.16"
[3] "/home/omnipath/local/R/4.2"      "/usr/lib/R/library"             
Warning: unable to access index for repository https://cran.uni-muenster.de/src/contrib:
  cannot open URL 'https://cran.uni-muenster.de/src/contrib/PACKAGES'
Warning: unable to access index for repository https://cran.uni-muenster.de/src/contrib:
  cannot open URL 'https://cran.uni-muenster.de/src/contrib/PACKAGES'
Bioconductor version '3.16' is out-of-date; the current release version '3.17'
  is available with R version '4.3'; see https://bioconductor.org/install
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.16 (BiocManager 1.30.20), R 4.2.3 (2023-03-15)
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.16 (BiocManager 1.30.20), R 4.2.3 (2023-03-15)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

Skipping 64 packages not available: RCurl, matrixStats, cpp11, BH, snow, futile.logger, Rcpp, rsvd, irlba, crayon, png, RSQLite, httr, xtable, DBI, XML, yaml, xml2, withr, tidyselect, tidyr, tibble, stringr, rvest, rmarkdown, rlang, readxl, readr, rappdirs, purrr, progress, magrittr, logger, later, jsonlite, igraph, dplyr, digest, curl, checkmate, BiocManager, knitr, bookdown, shiny, R.utils, mixtools, data.table, fastmatch, cowplot, ggplot2, e1071, patchwork, ggrepel, Seurat, testthat, pheatmap, sessioninfo, roxygen2, RefManageR, pkgdown, covr, ranger, glmnet, broom
[ Finished: 2023-04-30 00:00:23 CEST ]