[ Started: 2023-08-06 23:38:46 CEST ] [ decoupleR v2.5.2 for BioC-3.16 from https://github.com/saezlab/decoupleR@master ] Loading required package: BiocCheck cmd: /usr/lib/R/bin/R args: --vanilla CMD INSTALL --no-test-load --library=/tmp/RtmpOVrGEI/fileae3977abe7e9e/lib '/mnt/disk0/build/bioc-check/decoupler/bioc-3.16/2023-08-06_2334/decoupleR/decoupleR_2.5.2.tar.gz' stderr: * installing *source* package ‘decoupleR’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes Warning in file(con, "w") : cannot open file '/tmp/RtmpOVrGEI/fileae3977abe7e9e/lib/00LOCK-decoupleR/00new/decoupleR/doc/index.html': No such file or directory Error in file(con, "w") : cannot open the connection ERROR: installing vignettes failed * removing ‘/tmp/RtmpOVrGEI/fileae3977abe7e9e/lib/decoupleR’ * ERROR: /mnt/disk0/build/bioc-check/decoupler/bioc-3.16/2023-08-06_2334/decoupleR/decoupleR_2.5.2.tar.gz must be installable. ─ BiocCheckVersion: 1.34.3 ─ BiocVersion: 3.16 ─ Package: decoupleR ─ PackageVersion: 2.5.2 ─ sourceDir: /tmp/RtmpOVrGEI/fileae39739c52ee3/decoupleR ─ installDir: /tmp/RtmpOVrGEI/fileae3977abe7e9e ─ BiocCheckDir: /mnt/disk0/build/bioc-check/decoupler/bioc-3.16/2023-08-06_2334/decoupleR/decoupleR.BiocCheck ─ platform: unix ─ isTarBall: TRUE * Installing package... * Checking for deprecated package usage... * Checking for remote package usage... * Checking for 'LazyData: true' usage... * Checking version number... * Checking for version number mismatch... * Checking version number validity... * WARNING: y of x.y.z version should be even in release * Checking R version dependency... * NOTE: Update R version dependency from 4.0 to 4.2.0. * Checking package size... * Checking individual file sizes... * Checking biocViews... * Checking that biocViews are present... * Checking package type based on biocViews... Software * Checking for non-trivial biocViews... * Checking that biocViews come from the same category... * Checking biocViews validity... * Checking for recommended biocViews... * NOTE: Consider adding these automatically suggested biocViews: Proteomics, Transcriptomics, GeneTarget Search 'biocViews' at https://contributions.bioconductor.org * Checking build system compatibility... * Checking for blank lines in DESCRIPTION... * Checking if DESCRIPTION is well formatted... * Checking for proper Description: field... * Checking for whitespace in DESCRIPTION field names... * Checking that Package field matches directory/tarball name... * Checking for Version field... * Checking for valid maintainer... * Checking License: for restrictive use... * Checking for pinned package versions... * Checking DESCRIPTION/NAMESPACE consistency... Warning in packageDescription(pkgname, lib.loc = lib.loc) : no package 'decoupleR' was found Error in pkg_desc$Imports : $ operator is invalid for atomic vectors Calls: BiocCheck ... checkDescriptionNamespaceConsistency -> cleanupDependency Execution halted [ Finished: 2023-08-06 23:38:56 CEST ]